Locus 6052

Sequence ID X_DroMel_CAF1
Location 15,534,839 – 15,534,945
Length 106
Max. P 0.999770
window9836

overview

Window 6

Location 15,534,839 – 15,534,945
Length 106
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 70.26
Mean single sequence MFE -37.12
Consensus MFE -14.84
Energy contribution -17.52
Covariance contribution 2.68
Combinations/Pair 1.32
Mean z-score -3.17
Structure conservation index 0.40
SVM decision value 4.04
SVM RNA-class probability 0.999770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15534839 106 - 22224390
ACAUUGGCGAUUUCGUCCUGGUAAGG-CGUCUAGGAUGAAGUUCCUGGGCGGGUAUACUUGC--CCAACAUGU-G-CCAGCAUCACAUAGUUCGUGUGAAUGCAUUAAGGU-----
....(((((((((((((((((.....-...)))))))))))))..((((((((....)))))--)))......-)-)))(((((((((.....))))).))))........----- ( -44.90)
>DroSec_CAF1 12053 106 - 1
ACAUUGGCGAUUUCGUCCUGGUAAGG-CGUCUAGGAUGAAGUUCCUGGGCGGGUAUACUUGC--CCAAAAUGU-G-CCAGCAUCACAUAGUUCGUGUGAAUGCAUUAAGGU-----
....(((((((((((((((((.....-...)))))))))))))..((((((((....)))))--)))......-)-)))(((((((((.....))))).))))........----- ( -44.90)
>DroSim_CAF1 11588 106 - 1
ACAUUGGCGAUUUCGUCCUGGUAAGG-CGUCUAGGAUGAAGUUCCUGGGCGGGUAUACUUGC--CCAAAAUGU-G-CCAGCAUCACAUAGUUCGUGUGAAUGCAUUAAGGU-----
....(((((((((((((((((.....-...)))))))))))))..((((((((....)))))--)))......-)-)))(((((((((.....))))).))))........----- ( -44.90)
>DroEre_CAF1 12327 108 - 1
ACAUCGGCGAUUUCGUCCUGGUAAGCAAGACUAAGAUAUAGUUGCUGGGUGGGUACACUUGC--CUUACACGU-UCCCAGCUUUACAUAAUCCAUGUGAAUGCAUUAGGGU-----
....((((((((..(((.((((.......)))).)))..))))))))((..((....))..)--)........-.(((.(((((((((.....))))))).))....))).----- ( -29.60)
>DroWil_CAF1 83487 97 - 1
AUGUGGGAGAUCUGGUUCUGGUAAGU--ACGA----CAUAAUUG---------UACAAUUAUUUCUUACAUGAAUCUCAGAAUUUGUUAAUA----GAAAUGUUUUAGGGGUUCGG
(((((((((((((......))...((--((((----.....)))---------)))....)))))))))))((((((((((((...((....----))...))))).))))))).. ( -21.30)
>consensus
ACAUUGGCGAUUUCGUCCUGGUAAGG_CGUCUAGGAUGAAGUUCCUGGGCGGGUAUACUUGC__CCAACAUGU_G_CCAGCAUCACAUAGUUCGUGUGAAUGCAUUAAGGU_____
...((((.(((((((((((((.........))))))))))))).....(((((....)))))..))))...........(((((((((.....))))).))))............. (-14.84 = -17.52 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:00 2006