Locus 6051

Sequence ID X_DroMel_CAF1
Location 15,534,656 – 15,534,762
Length 106
Max. P 0.772320
window9835

overview

Window 5

Location 15,534,656 – 15,534,762
Length 106
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.77
Mean single sequence MFE -29.45
Consensus MFE -20.40
Energy contribution -20.57
Covariance contribution 0.17
Combinations/Pair 1.33
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value 0.53
SVM RNA-class probability 0.772320
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15534656 106 - 22224390
UAAUGCAACC----AU---UUCCAGUGCAAAGGACCCUCCAUGGAGCCCACCCUGCACUCGGACAACGUUCUUCUCACCGAGCGCUUGUCGAAACACUGGCGAACCUACCAGC
..........----.(---(((.((((((..((...(((....)))....)).))))))..((((((((((........))))).)))))))))..((((........)))). ( -27.40)
>DroVir_CAF1 14327 107 - 1
CGAUA-AACGAUGC-----UUUCAGUGCAAAGGACCCUCCAUGGAGCCAACGCUCUUCUCAGAUAACGUGCUGCUGACGGAACGCCUAUCCAAAUAUUGGCGUAAAUAUCAAU
.((((-.......(-----(.((((((((..((.....))..(((((....)))))............))).))))).)).(((((............)))))...))))... ( -26.50)
>DroSec_CAF1 11871 106 - 1
UAAUAUAACC----AU---UUCCAGUGCAAAGGACCCUCCAUGGAGCCCACCCUGCACUCGGACAACGUUCUUCUCACCGAGCGCUUGUCCAAGCACUGGCGAACCUACCAGC
..........----.(---(.(((((((..(((...(((....))).....)))......(((((((((((........))))).))))))..))))))).)).......... ( -32.70)
>DroEre_CAF1 12119 106 - 1
UAAUGUAACC----AC---UUCCAGUGUAAAGGACCCUCCAUGGAACCCACUCUCCACUCGGACAACGUCCUGAUCACCGAGCGCUUGUCAAAGCACUGGCGAAGUUACCAGC
....(((((.----..---..(((((((...((.....)).((((........))))....(((((((..(........)..)).)))))...)))))))....))))).... ( -26.90)
>DroYak_CAF1 10785 106 - 1
UGAUAUAACC----AC---UUGCAGUGCAAGGGACCCUCCAUGGAGCCCACUCUCCACUCGGACAACGUUCUGCUCACCGAGCGCUUGUCGAAGCACUGGCGAACUUACCAGG
..........----..---(((((((((..(((..((.....))..)))............((((((((((........))))).)))))...))))).)))).......... ( -31.70)
>DroAna_CAF1 15484 109 - 1
GAUUAUAACC----UUCCGUUUCAGUGCAAGGGACCCUCAAUGGAGCCCACACUCUUCUCCGACAAUGUUCUGGUCACCGAGCGGCUGUCGAAGUUCUGGCGCGGCUACCAGC
..........----..((((.((((.((..(((..((.....))..)))...........(((((.(((((.(....).)))))..)))))..)).)))).))))........ ( -31.50)
>consensus
UAAUAUAACC____AU___UUCCAGUGCAAAGGACCCUCCAUGGAGCCCACCCUCCACUCGGACAACGUUCUGCUCACCGAGCGCUUGUCGAAGCACUGGCGAACCUACCAGC
.....................(((((((...((..((.....))..)).............((((((((((........))))).)))))...)))))))............. (-20.40 = -20.57 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:59 2006