Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,679,516 – 1,679,661 |
Length | 145 |
Max. P | 0.516338 |
Location | 1,679,516 – 1,679,636 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.59 |
Mean single sequence MFE | -27.97 |
Consensus MFE | -22.22 |
Energy contribution | -21.67 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.10 |
Mean z-score | -1.66 |
Structure conservation index | 0.79 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1679516 120 + 22224390 CUAUCACGUUAACGUUUCUGGUGCAGAGUUCUUACCAGAAUUGCCAUUUCAGUGACCAACACUACUGGCUCCUCUGGUAUCGUCAGGAUGGCAACCCUUCCUGAUAGUGCCUUCACUUUA .....(((....)))((((((((.((....))))))))))..((((....((((.....))))..))))......(((((..((((((.((....)).))))))..)))))......... ( -37.80) >DroSec_CAF1 19747 107 + 1 -------------GUUUCUGGUGUAGAGUUCUUAGCAGAAUUGUAAUUUCAGUGACCAACACUACUGGCUCCUCUGUUAUCGAUAGGAUGACAAUCCUUCCUGAAAGUGCUUUCACUUUA -------------......((((.(((((.(((((((((...((......((((.....))))....))...)))))).(((..(((((....)))))...)))))).)))))))))... ( -23.90) >DroSim_CAF1 13599 107 + 1 -------------GUUUCUGGUGUAGAGUUCUUAGCAGAAUUGUAAUUUCAGUGACCAACACUACUGGCUCCUCUGUUAUCGAUAGGAUGACAACCCUUCCUGAAAAUGCUUUCACUUUA -------------..(((((.((.((....)))).)))))..(((.((((((.(((((.......)))......(((((((.....))))))).....)))))))).))).......... ( -22.20) >consensus _____________GUUUCUGGUGUAGAGUUCUUAGCAGAAUUGUAAUUUCAGUGACCAACACUACUGGCUCCUCUGUUAUCGAUAGGAUGACAACCCUUCCUGAAAGUGCUUUCACUUUA ...................((((.(((((...(((((((...((.....(((((........)))))))...)))))))....(((((.(......).))))).....)))))))))... (-22.22 = -21.67 + -0.55)
Location | 1,679,556 – 1,679,661 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.44 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -19.59 |
Energy contribution | -19.27 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.93 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1679556 105 - 22224390 ---------------AAACACAAUGACGAGCACUUCUCAAUAAAGUGAAGGCACUAUCAGGAAGGGUUGCCAUCCUGACGAUACCAGAGGAGCCAGUAGUGUUGGUCACUGAAAUGGCAA ---------------.....((.((((.((((((.((((......))).(((....((((((.((....)).)))))).....((...)).))).).)))))).)))).))......... ( -30.40) >DroSec_CAF1 19774 120 - 1 UCUGACUAGGACUGCAAACACAAUGACAAGCAUAUCUCAAUAAAGUGAAAGCACUUUCAGGAAGGAUUGUCAUCCUAUCGAUAACAGAGGAGCCAGUAGUGUUGGUCACUGAAAUUACAA ..(((((((.(((((........((((((.(...(((....((((((....))))))..)))..).))))))((((...........))))....))))).)))))))............ ( -29.50) >DroSim_CAF1 13626 120 - 1 UCUGACUAGGACUGCAAACACAAUGACAAGCAUAUCUCAAUAAAGUGAAAGCAUUUUCAGGAAGGGUUGUCAUCCUAUCGAUAACAGAGGAGCCAGUAGUGUUGGUCACUGAAAUUACAA ..(((((((.(((((........((((((.(...(((....((((((....))))))..)))..).))))))((((...........))))....))))).)))))))............ ( -29.30) >consensus UCUGACUAGGACUGCAAACACAAUGACAAGCAUAUCUCAAUAAAGUGAAAGCACUUUCAGGAAGGGUUGUCAUCCUAUCGAUAACAGAGGAGCCAGUAGUGUUGGUCACUGAAAUUACAA ....................((.((((.(((((..(((...((((((....))))))..(..(((((....)))))..)..........)))......))))).)))).))......... (-19.59 = -19.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:16 2006