| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,520,553 – 15,520,673 |
| Length | 120 |
| Max. P | 0.684007 |
| Location | 15,520,553 – 15,520,673 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.01 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -7.76 |
| Energy contribution | -8.48 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15520553 120 + 22224390 CUUUAUCGUAUGACCGUUUGUUUUUGUUUAUCGAUGGUAGAGCAGAAUUGCGUUUUUCUGUGGCCAUUGAUCGACGCUUUGAAUCGUUAUCUGGUGUCUUUUUGUCAUCAGAUUUUUGAG .....(((..((((.(((((....((((.(((((((((...((((((........)))))).))))))))).))))...))))).))))(((((((.(.....).)))))))....))). ( -34.90) >DroSec_CAF1 80954 120 + 1 CCUGAUCGUAUGACCGUUUCUUUGUGUCCAUCGAUGGUGGAUCAUAAUUGCGUUUUUCUGUGGCCAUUGAUCGACGCUUUGAAUCGGUUUCUGGUGUCUUUUGGCCACCAGAUUUCUGUC ...........(((((.(((...(((((.(((((((((.(.....((......)).....).))))))))).)))))...))).)))))(((((((((....)).)))))))........ ( -39.30) >DroSim_CAF1 93001 105 + 1 CUUGAUCGUAUGACCGUUUCAUUGUGUCCAUCGAUGGUGGAUCACAAUUGCGUUUUUCUGUGGCCAUUGAUCGA---------------UCUGGUGUCUUUUGGCCACCAGAUUUCUGUC ...(((((.(((.((.....(((((((((((.....))))).)))))).(((......))))).))))))))((---------------(((((((((....)).)))))))))...... ( -34.00) >DroEre_CAF1 82678 114 + 1 CUUGAUCAUCUGAACGUUGG------UUCCUUGGUGUCAAAGCACAAUCUCGCUUUUCAAUGGGCUUUGAUAUACACUUUGAAUGGAAUACUGGUGUUUUCUGGCCUUCAGAUUGGUUCG ...(((((((((((.((..(------.......((((((((((.((..............)).))))))))))(((((..............)))))...)..)).)))))).))))).. ( -27.98) >DroYak_CAF1 92869 108 + 1 CUUGAUCCUGUGAACGUUGU------UUCUUCGGUGGAAAAGCACAAACUCUGUUUUCUUUGGG---UAAUUGAUGCUUU---UGGGUUACUGGUGUUUUUGGGACUUCAGAUUUCUUGG .(((((((((.(((((....------....(((((((((((((((((((((..........)))---)..))).))))))---)...)))))))))))).)))))..))))......... ( -21.30) >consensus CUUGAUCGUAUGACCGUUUC_UU_UGUUCAUCGAUGGUAGAGCACAAUUGCGUUUUUCUGUGGCCAUUGAUCGACGCUUUGAAUCGGUUUCUGGUGUCUUUUGGCCAUCAGAUUUCUGUG ..............................((((((((........................))))))))....................((((((.(.....).))))))......... ( -7.76 = -8.48 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:57 2006