Locus 6048

Sequence ID X_DroMel_CAF1
Location 15,518,267 – 15,518,361
Length 94
Max. P 0.556750
window9832

overview

Window 2

Location 15,518,267 – 15,518,361
Length 94
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 79.59
Mean single sequence MFE -22.22
Consensus MFE -17.92
Energy contribution -18.16
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.29
Structure conservation index 0.81
SVM decision value 0.05
SVM RNA-class probability 0.556750
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15518267 94 + 22224390
UCGUAUGGAUUGCAGAAUUCGCCUGCAAUACGAAAGCAACUGCUAAGCCAAAUGGGAUGGGUAUUUGGAUUUGGAUUCGG-------AACUAAGAACUAAG
((((.((((((((((.......))))))).....(((....)))...))).))))....(((.(((((.((((....)))-------).))))).)))... ( -20.60)
>DroSec_CAF1 78760 101 + 1
UCGAAUGGAUUGCAGGAUUCGCCUGCAAUACGAAAGCAACUGCUAAGCCAAAUGGGAUGGGUAUUUGGAUUUGGAUUUGGACUCAAAAACUAACAACUAAG
.....(((((((((((.....)))))))).....(((....)))...)))..(((....(((.((((..(((......)))..)))).))).....))).. ( -23.00)
>DroSim_CAF1 90816 101 + 1
UCGAAUGGAUUGCAGGAUUCGCUUGCAAUACGAAAGCAACUGCUAAGCCAAAUGGGAUGGGUAUUUGGAUUUGGAUUUGGACUCAAAAACUAAGAACUAAG
.....(((((((((((.....)))))))).....(((....)))...)))..(((....(((.((((..(((......)))..)))).))).....))).. ( -20.30)
>DroEre_CAF1 80546 80 + 1
UCGAAUGGAUUGCAGGAUUCGCCUGCAAUACGAAAGCAACUGCUAAGCCAAAUGGGAUGGGUAUUUGGAUUUCGAGUUAG---------------------
........((((((((.....)))))))).(((((.(((.((((...((.....))...)))).)))..)))))......--------------------- ( -23.40)
>DroYak_CAF1 90561 73 + 1
-------UAUUGCAGGAUUCGCCUGCAAUACGAAAGCAACUGCUAAGCCAAAUGGGAAGGGUAUUUGGAUUUGGAGUUAA---------------------
-------(((((((((.....)))))))))(....).((((.((((((((((((.......))))))).)))))))))..--------------------- ( -23.80)
>consensus
UCGAAUGGAUUGCAGGAUUCGCCUGCAAUACGAAAGCAACUGCUAAGCCAAAUGGGAUGGGUAUUUGGAUUUGGAUUUGG_______AACUAA_AACUAAG
........((((((((.....)))))))).((((..(((.((((...((.....))...)))).)))..))))............................ (-17.92 = -18.16 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:56 2006