Locus 6046

Sequence ID	X_DroMel_CAF1
Location	15,515,437 – 15,515,554
Length	117
Max. P	0.803173

overview

Window 9

Location	15,515,437 – 15,515,554
Length	117
Sequences	5
Columns	117
Reading direction	forward
Mean pairwise identity	87.72
Mean single sequence MFE	-26.74
Consensus MFE	-20.38
Energy contribution	-21.10
Covariance contribution	0.72
Combinations/Pair	1.12
Mean z-score	-1.88
Structure conservation index	0.76
SVM decision value	0.62
SVM RNA-class probability	0.803173
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15515437 117 + 22224390
GUAUUCAGCCUGGCCUAGUAGACAUAAUCAAUCUUAGGGACUCCUUGCCAGAUUCCUAGAUCUGGAUUAGACUCCCCCUGCUUUGCAUAUGCUCUGCAUAAUAUCGCCAUGCAUCAU
.......((.((((.(((((((((((..(((.....((((.((....(((((((....)))))))....)).))))......)))..)))).))))).)).....)))).))..... ( -31.60)
>DroSec_CAF1 75886 104 + 1
GUA------------UAGUAGCCAUAAUCAAUCUUAGGGACUCCUUGCCAGAUUCCUAGAUCUGGAUUA-ACUCCCCCUGCUUUGCAUAUGCUCUGCAUAAUAUCGCCAUGCAUCAU
(((------------.(((((...(((......)))((((.......(((((((....)))))))....-..)))).))))).)))..((((...((........))...))))... ( -23.62)
>DroSim_CAF1 87871 105 + 1
GUA------------UAGUAGAUAUAAUCAAUCUUAGGGACUCCUUGCCAGAUUCCUAGAUCUGGAUUAGACUCCCCCUGCUUUGCAUAUGCUCUGCAUAAUAUCGCCAUGCAUCAU
(((------------(.((.(((((...........((((.((....(((((((....)))))))....)).))))..(((...((....))...)))..))))))).))))..... ( -28.20)
>DroEre_CAF1 77730 117 + 1
AUAUUCAGCACAGCCUAGUAAGCAUAAUCAAUCUUAGGGACUCCUUGCCAGACUCCUAGACCUGGAUUAGACUCCCCCUGCUUUGCAUAUGCUCUGCAUAAUAUCGCCAUGCAUCAU
.......(((..((...((((((((((......)))((((.((....((((..........))))....)).))))..))).)))).(((((...))))).....))..)))..... ( -23.80)
>DroYak_CAF1 82687 110 + 1
AUAUUCA-----GGCUAGUGGGCAUAAUCAAUCUUAGGGAAUCCUGGCCAGACUGCAAGAUCUGGAUUAGACUCCCCCUGCUUUGCAUAUGCUCUGCAUAAUAUCGCCAUGCAUC--
.......-----((((((..((((((..(((...(((((....(((((((((........))))).)))).....)))))..)))..))))).)..).)).....))).......-- ( -26.50)
>consensus
GUAUUCA_____G_CUAGUAGACAUAAUCAAUCUUAGGGACUCCUUGCCAGAUUCCUAGAUCUGGAUUAGACUCCCCCUGCUUUGCAUAUGCUCUGCAUAAUAUCGCCAUGCAUCAU
.................(((((((((..(((.....((((.((....(((((((....)))))))....)).))))......)))..)))).))))).................... (-20.38 = -21.10 +   0.72)

alignment

secondary structure

dotplot

Window 0

Location	15,515,437 – 15,515,554
Length	117
Sequences	5
Columns	117
Reading direction	reverse
Mean pairwise identity	87.72
Mean single sequence MFE	-31.62
Consensus MFE	-27.02
Energy contribution	-27.06
Covariance contribution	0.04
Combinations/Pair	1.10
Mean z-score	-1.60
Structure conservation index	0.85
SVM decision value	0.61
SVM RNA-class probability	0.799647
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15515437 117 - 22224390
AUGAUGCAUGGCGAUAUUAUGCAGAGCAUAUGCAAAGCAGGGGGAGUCUAAUCCAGAUCUAGGAAUCUGGCAAGGAGUCCCUAAGAUUGAUUAUGUCUACUAGGCCAGGCUGAAUAC
.....((.((((.......(((...((....))...))).(((((.(((...((((((......))))))...))).))))).((((.......)))).....)))).))....... ( -33.70)
>DroSec_CAF1 75886 104 - 1
AUGAUGCAUGGCGAUAUUAUGCAGAGCAUAUGCAAAGCAGGGGGAGU-UAAUCCAGAUCUAGGAAUCUGGCAAGGAGUCCCUAAGAUUGAUUAUGGCUACUA------------UAC
....(((((((.....))))))).((((((..(((.....(((((.(-(...((((((......))))))....)).)))))....)))..))).)))....------------... ( -26.70)
>DroSim_CAF1 87871 105 - 1
AUGAUGCAUGGCGAUAUUAUGCAGAGCAUAUGCAAAGCAGGGGGAGUCUAAUCCAGAUCUAGGAAUCUGGCAAGGAGUCCCUAAGAUUGAUUAUAUCUACUA------------UAC
....(((...(((....(((((...))))))))...))).(((((.(((...((((((......))))))...))).))))).((((.......))))....------------... ( -28.30)
>DroEre_CAF1 77730 117 - 1
AUGAUGCAUGGCGAUAUUAUGCAGAGCAUAUGCAAAGCAGGGGGAGUCUAAUCCAGGUCUAGGAGUCUGGCAAGGAGUCCCUAAGAUUGAUUAUGCUUACUAGGCUGUGCUGAAUAU
.....((((((((........).(((((((..(((.....(((((.(((...(((((........)))))...))).)))))....)))..))))))).....)))))))....... ( -35.30)
>DroYak_CAF1 82687 110 - 1
--GAUGCAUGGCGAUAUUAUGCAGAGCAUAUGCAAAGCAGGGGGAGUCUAAUCCAGAUCUUGCAGUCUGGCCAGGAUUCCCUAAGAUUGAUUAUGCCCACUAGCC-----UGAAUAU
--..(((((((.....)))))))(.(((((..(((.....(((((((((...((((((......))))))...)))))))))....)))..))))).).......-----....... ( -34.10)
>consensus
AUGAUGCAUGGCGAUAUUAUGCAGAGCAUAUGCAAAGCAGGGGGAGUCUAAUCCAGAUCUAGGAAUCUGGCAAGGAGUCCCUAAGAUUGAUUAUGCCUACUAG_C_____UGAAUAC
....(((((((.....)))))))..(((((..(((.....(((((.(((...((((((......))))))...))).)))))....)))..)))))..................... (-27.02 = -27.06 +   0.04)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:54 2006