Locus 6043

Sequence ID X_DroMel_CAF1
Location 15,512,808 – 15,512,907
Length 99
Max. P 0.970583
window9818

overview

Window 8

Location 15,512,808 – 15,512,907
Length 99
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 81.88
Mean single sequence MFE -39.14
Consensus MFE -27.86
Energy contribution -28.46
Covariance contribution 0.60
Combinations/Pair 1.10
Mean z-score -2.47
Structure conservation index 0.71
SVM decision value 1.66
SVM RNA-class probability 0.970583
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15512808 99 - 22224390
GACAAGGGACCUGCCCUGAUUUCGGCGGGUUAUCCAUAUGUACAUUUG--------CAUGUA-----------UAUCACGAAUAUUCCCUGGAGCGGGCUGCUUGACCGCUCGACCUU
....(((((((((((........))))))...((...((((((((...--------.)))))-----------)))...))....))))).((((((.........))))))...... ( -33.40)
>DroSec_CAF1 73333 99 - 1
GACAAGGAACCUGCCCUGAUUUCGGCGGGUUAUCCAUAUGUACAUUUG--------UAUGUA-----------UGUCAGGGAUAUUCCCUCGGGCGGGCUGCUUGACCGCUCGACCUU
(((..((((((((((........)))))))..)))((((((((....)--------))))))-----------)))).(((.....)))((((((((.........)))))))).... ( -41.40)
>DroSim_CAF1 85373 99 - 1
GACAAGGAACCUGCCCUGAUUUCGGCGGGUUAUCCAUAUGUACAUUUG--------UAUGUA-----------UAUCAGGGAUAUUCCCUCGGGCGGGCUGCUUGACCGCUCGACCUU
...((((((((((((........))))))))((((..((((((((...--------.)))))-----------)))...))))......((((((((.........)))))))))))) ( -39.50)
>DroEre_CAF1 75241 92 - 1
GACAUGGGACCUGCCCUGAUUUCGGCGGGUUAUCCAUAUGCAUGCGAG-------------------------UAUCAGGGAUAU-CCCCGGGGCGGGCUGCUUGACCGCUCGACCUC
.....((((((((((........)))))))(((((..((((......)-------------------------)))...))))).-.)))(((((((((.(.....).))))).)))) ( -34.60)
>DroYak_CAF1 80110 117 - 1
GACAAGGGACCUGCCCCGAUUUCGGCGGGUUAUCCAUAUGUAUAUCAGGGAUAUAUCAGGGAUAUCAGGGAUAUAUCAGGGAUAU-CCCUGGGGCGGGCUGCUUGACCGCUCGACCUC
....(((((((((((........))))))))((((...((.....)).))))....((((((((((...((....))...)))))-)))))((((((.........))))))..))). ( -46.80)
>consensus
GACAAGGGACCUGCCCUGAUUUCGGCGGGUUAUCCAUAUGUACAUUUG________CAUGUA___________UAUCAGGGAUAUUCCCUGGGGCGGGCUGCUUGACCGCUCGACCUU
.....((((((((((........)))))))..))).........................................(((((.....)))))((((((.........))))))...... (-27.86 = -28.46 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:45 2006