| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,510,199 – 15,510,304 |
| Length | 105 |
| Max. P | 0.880325 |
| Location | 15,510,199 – 15,510,304 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -8.09 |
| Energy contribution | -8.05 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15510199 105 - 22224390 GGUGCUGCAAGGAAAGA-GCA--AAGGAAUCUG-GUUAGGAAGGGGGCGGGUAUUUCUGGUUCUG-----GCAUUCCAGAACU--UGACUUUCUUAAGGA----GCAAAUAAAUAAAGAG ..((((.(.(((((((.-...--.((((((((.-(((........))).)).))))))(((((((-----(....))))))))--...)))))))..).)----)))............. ( -28.80) >DroSec_CAF1 70699 103 - 1 GGUGCUGCAAGGAAAGA-GCA--AAGGAAUCGG-GUUAGGAAGGGG--CGGCAUUUCUGGUUCUG-----GCAUUCCAGAACU--UGACUUUCUGAAGCA----GCAAAUAAAUAAAGAG ..((((((..((((((.-...--.(((((((.(-.((......)).--).).))))))(((((((-----(....))))))))--...))))))...)))----)))............. ( -31.00) >DroEre_CAF1 72408 103 - 1 GGUGCUGCAAGGAAGGA-GCG--AAGGAAUCGG-GUUAGGAAGGGG--CGGUAUUUCUGGUUCUC-----ACAUUCCAGAACU--UGACUUUCUGAAGGA----GCAAAUAAGUAAAGAG ..((((.(..((((((.-.(.--...)..((((-(((.((((.(((--(((.....)))...)))-----...))))..))))--)))))))))...).)----)))............. ( -24.70) >DroYak_CAF1 76946 104 - 1 GGUGCUGGAAGGAAGAAGGCG--AAGGAGUCGG-GUUAGGAAGGGC--UGGCAUUUCUGGUUCUC-----GCAUUCCAGAACU--UGACUUUCUGCAGGA----GCAAGUAAGUAAAAAG ....((((((....((..((.--.(((((((.(-(((......)))--).).)))))).))..))-----...)))))).(((--((.((((.....)))----)))))).......... ( -27.10) >DroAna_CAF1 105508 113 - 1 GGUGCUGGAAAGGAAGA-GAAGAGAGGAGGCGGGGUUAGAGUGGGU--U--CGAUUCUGGUUCUGUCUGCGAAUUCCUGACUUUUUGGCUUU--UAAGCGAAAAACAAUAAAAACAAAAA ...((..(((((..((.-(((....(.((((((..(((((((.(..--.--).)))))))..)))))).)...)))))..)))))..))...--.......................... ( -34.90) >consensus GGUGCUGCAAGGAAAGA_GCA__AAGGAAUCGG_GUUAGGAAGGGG__CGGCAUUUCUGGUUCUG_____GCAUUCCAGAACU__UGACUUUCUGAAGGA____GCAAAUAAAUAAAGAG ....((....((((((.........((((((((.(..(((((...........)))))..).))).......)))))....(....).))))))..))...................... ( -8.09 = -8.05 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:42 2006