Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,674,096 – 1,674,189 |
Length | 93 |
Max. P | 0.905846 |
Location | 1,674,096 – 1,674,189 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.89 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -15.80 |
Energy contribution | -15.67 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.12 |
Mean z-score | -2.36 |
Structure conservation index | 0.48 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1674096 93 + 22224390 CUUUAAAUCCAUUUCGAUGGAUGUG----------------U---AGGUCCACACGCACAUGGCCACC-------AUCCGUC-CAUCCGACGGUGGUGGUGGCUGUGAUUCAGAGCCCUU ......((((((....))))))(((----------------(---..(....)..))))...((((((-------(.(((((-.....))))))))))))((((.((...)).))))... ( -35.70) >DroSec_CAF1 8192 91 + 1 CUUUAAAUCCAUUUCGAUGGAUGUG----------------U---AUGUCCACACGCACAUGGACACC-------AUCCGUCCCAUCCGAGGGU---GGUGGCUGUGAUUCAGAGCCCUU ...............((((((((.(----------------(---..(((((........))))))))-------)))))))(((((....)))---)).((((.((...)).))))... ( -31.00) >DroEre_CAF1 11753 104 + 1 UUUUAAAUCCAUUUCGAUGGAUGUAGGUCCACGUCCACGUCC---ACGUCCACACGCACAUGGACACC------CAACCUCU-CAUCGGAGG------GUGGCUGUGAUUCAGAGCCCUU ......((((((....))))))...((..((((.((((((((---(.((.(....).)).)))))...------...(((((-....)))))------)))).))))..))......... ( -31.50) >DroYak_CAF1 10403 110 + 1 UUUUAAAUUCAUUUCGAUGGAUAUAGGUCC---UCCACGUCCACCAUGUCCACACGCACAUGGAUACCCCCAGCCAGCCGUC-CAUCCACGG------GUGGCUGUGAUUCAGAGCCCUU ......((((((....))))))..(((..(---((...(((..((((((.(....).)))))).......((((((.((((.-.....))))------.)))))).)))...))).))). ( -32.30) >consensus CUUUAAAUCCAUUUCGAUGGAUGUA________________C___AUGUCCACACGCACAUGGACACC_______AUCCGUC_CAUCCGAGG______GUGGCUGUGAUUCAGAGCCCUU ......((((((....)))))).........................(((((........)))))...................................((((.((...)).))))... (-15.80 = -15.67 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:14 2006