Locus 6039

Sequence ID X_DroMel_CAF1
Location 15,505,481 – 15,505,575
Length 94
Max. P 0.736343
window9812

overview

Window 2

Location 15,505,481 – 15,505,575
Length 94
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 80.12
Mean single sequence MFE -33.70
Consensus MFE -17.06
Energy contribution -18.22
Covariance contribution 1.16
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.51
SVM decision value 0.44
SVM RNA-class probability 0.736343
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15505481 94 - 22224390
GUGAGAUGA---------------AUUGGAAUGCAAAGCAUUCGAUUUCAAUAUCAACCCGAUCGCUCCCGCUCCGGGGGGUGGGACGAGUUCAAAUUGCCGGGCUA--------GU
.(((..(((---------------(.(.((((((...)))))).).))))...))).((((.(((.((((((((....)))))))))))((.......))))))...--------.. ( -34.50)
>DroSec_CAF1 66122 94 - 1
GUGAGAUGA---------------AUUGGAAUGCAAAGCAUUCGAUUUCAAUAUCAACCCGAUCGCUGCCGCUCCGGGGGGCGGGACGAGUUCAAAUUGCCGGGGUA--------GU
.(((..(((---------------(.(.((((((...)))))).).))))...))).((((.(((.(.((((((....)))))).))))((.......))))))...--------.. ( -32.60)
>DroSim_CAF1 78426 94 - 1
GUGAGAUGA---------------AUUGGAAUGCAAAGCAUUCGAUUUCAAUAUCAACCCGAUCGCUGCCGCUCCGGGGGGCGGGACGAGUUCAAAUUGCCGGGGUA--------GU
.(((..(((---------------(.(.((((((...)))))).).))))...))).((((.(((.(.((((((....)))))).))))((.......))))))...--------.. ( -32.60)
>DroEre_CAF1 67612 88 - 1
GCGAGAUGA---------------GAUGGAAUGCAGGGCAUUCGAUUUCAAUAUCAACCCGAUCG------CUCCGGGGGGCGGGACGAGUUGAAAUCGCCAGGGUA--------GU
((((..(((---------------(((.((((((...)))))).))))))...(((((.((.(((------(((....))))))..)).)))))..)))).......--------.. ( -35.00)
>DroYak_CAF1 71980 111 - 1
GUGAGAUGAGAUGACUUGAGUUGAGAUGGAAUGCAAAGCAUUCAAUUUCAAUAUCAACCCGAUCG------CUCCAGGGGGCGGGAUGAGUGGAAAUUGGCGGGGUGCUGGUGUGAU
((.(.((.((.....((((((((((((.((((((...)))))).)))))))).))))((((.(((------(((....))))))..(.(((....))).)))))...)).)).).)) ( -33.80)
>consensus
GUGAGAUGA_______________AUUGGAAUGCAAAGCAUUCGAUUUCAAUAUCAACCCGAUCGCU_CCGCUCCGGGGGGCGGGACGAGUUCAAAUUGCCGGGGUA________GU
............................((((((...))))))..............((((.(((...((((((....))))))..)))...........))))............. (-17.06 = -18.22 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:39 2006