Locus 6037

Sequence ID X_DroMel_CAF1
Location 15,502,434 – 15,502,543
Length 109
Max. P 0.671435
window9810

overview

Window 0

Location 15,502,434 – 15,502,543
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 85.41
Mean single sequence MFE -50.22
Consensus MFE -42.87
Energy contribution -44.90
Covariance contribution 2.03
Combinations/Pair 1.09
Mean z-score -1.57
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.671435
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15502434 109 + 22224390
AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGAGCCGUGCCCGUGCCCGUGUCCGUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU
.((((.(((((((((((((((.(((((.(((....))))))))))))..(((((....)).))).(((....))))))))))))))..))))...(((....))).... ( -55.80)
>DroSec_CAF1 62943 103 + 1
AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGGGCCGUGC------CCGUGUCCAUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU
.((((.((((((((((((.((....)).((((((.(.(((((((.------.......))))))).))))))).))))))))))))..))))...(((....))).... ( -54.30)
>DroSim_CAF1 75278 103 + 1
AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGCGCCGUGC------CCGUGUCCAUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU
.((((.(((((((((((((((.((((((((.....))))))))))------))............(((....))))))))))))))..))))...(((....))).... ( -55.90)
>DroEre_CAF1 64677 85 + 1
AAGGCGGGGCGGUAGGUGGGCGAAGGCGUCUGGGUGU------------------------GGCUGCUCCGGAGCACCUGCUGUCUGAGCCUGUGCCGCUGGCGGAGAU
.((((.((((((((((((.((....)).((((((.((------------------------....)))))))).))))))))))))..))))...(((....))).... ( -41.90)
>DroYak_CAF1 69221 91 + 1
AAGGCGGGGCGGUAGGUGGGCGAAGGCGUCUGGGUGUGGG------------------CGUGGCUGCUCCGAAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU
.((((.((((((((((((.((....)).....((.(..(.------------------.....)..).))....))))))))))))..))))...(((....))).... ( -43.20)
>consensus
AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGGGCCGUGC______CCGUGUCCAUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU
.((((.((((((((((((.((....)).((((((.(.(((((((..............))))))).))))))).))))))))))))..))))...(((....))).... (-42.87 = -44.90 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:36 2006