Locus 6035

Sequence ID X_DroMel_CAF1
Location 15,498,505 – 15,498,607
Length 102
Max. P 0.850900
window9808

overview

Window 8

Location 15,498,505 – 15,498,607
Length 102
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 85.90
Mean single sequence MFE -26.26
Consensus MFE -18.06
Energy contribution -18.74
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -2.35
Structure conservation index 0.69
SVM decision value 0.79
SVM RNA-class probability 0.850900
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15498505 102 + 22224390
CAGUUGCGAUUCAUUCGGCUCGAUUCCCCCACCCCGAUGUCCUGGAUAUGGGACAUCCC--------------AUCCUAGCACACCUUUUCCCCCUGACACUGAUUGAGUUCGCAU
....(((((((((.((((.(((............)))(((.((((..(((((....)))--------------)).)))).)))................)))).)))).))))). ( -26.10)
>DroSec_CAF1 58765 100 + 1
CAGUUGCGAUUCAUUCGGCUCGAUUCCCCCACCCCGAUGUCCUGGAUAUAGGACAUCCC--------------AUAC-AGCACACCUUUUCCCCCUGACACUGAUUGAGUUCGC-U
.....((((((((.((((.................(((((((((....)))))))))..--------------...(-((..............)))...)))).)))).))))-. ( -25.74)
>DroSim_CAF1 71341 100 + 1
CAGUUGCGAUUCAUUCGGCUCGAUUCCCCCACCCCGAUGUCCUGGAUAUAGGACAUCCC--------------AUAC-AGCACACCUUUUCCCCCUGACACUGAUUGAGUUCGC-U
.....((((((((.((((.................(((((((((....)))))))))..--------------...(-((..............)))...)))).)))).))))-. ( -25.74)
>DroEre_CAF1 60467 113 + 1
CAGUUGCGAUUCAUUCUGCUCGAUUCCCCCACCCCAAUGUCCUGGAUGUAGGACAUCCCAGCUCGCAUAUCCCAUGC-AGCUCACCUUUUCCCC-UGACACUGAUUGAGUUCGC-U
.....((((........((((((((...........((((((((....))))))))...((((.((((.....))))-))))............-.......))))))))))))-. ( -26.90)
>DroYak_CAF1 65627 91 + 1
CAGUUGCGAUUCAUUCUGCUCGAUUCCCCCAUC-CAGUCUCCUGGAUGUAGGACAU-----------------------GCACACCUUUUCCCCGUGACACUGAUUGAGUUCGC-U
.....((((((((.(((((.....(((..((((-(((....)))))))..)))...-----------------------)))(((.........))).....)).)))).))))-. ( -26.80)
>consensus
CAGUUGCGAUUCAUUCGGCUCGAUUCCCCCACCCCGAUGUCCUGGAUAUAGGACAUCCC______________AUAC_AGCACACCUUUUCCCCCUGACACUGAUUGAGUUCGC_U
.....((((((((.((((.(((.......).....(((((((((....))))))))).......................................))..)))).)))).)))).. (-18.06 = -18.74 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:34 2006