| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,497,683 – 15,497,777 |
| Length | 94 |
| Max. P | 0.728387 |
| Location | 15,497,683 – 15,497,777 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.21 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -17.75 |
| Energy contribution | -18.37 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15497683 94 - 22224390 --------GGCUGGACCUUCGGGUAAGCACUUAAGCCAAUUUGAUGUGAAGUGAACUUAUGCGGCUUUGUUUACCUUGCGGUUUAGUUCUAUGU------------------AUGAGUUU --------(((((((((...(((((((((...(((((.((.....)).(((....)))....))))))))))))))...)))))))))......------------------........ ( -26.70) >DroSec_CAF1 57914 112 - 1 --------GGCUGGACUUUCGGGUAAGCACUUAAGCCAAUUUGAUGUGAAGUGAACUUAUGCGGCUUUGUUUACCCUGCGGUUUAGAUCUAUGUAUCUAUGUAUUUAGAUCUAUGAGUUU --------....((((((..(((((((((...(((((.((.....)).(((....)))....)))))))))))))).......((((((((.((((....)))).)))))))).)))))) ( -31.20) >DroSim_CAF1 70523 94 - 1 --------GGCUGGACUUUCGGGUAAGCACUUAAGCCAAUUUGAUGUGAAGAGAACUUAUGCGGCUUUGUUUACCCUGCGGUUUAGAUCUAUGU------------------AUGAGUUU --------(((((((((...(((((((((...(((((....(((.((.......)))))...))))))))))))))...))))))).)).....------------------........ ( -25.20) >DroEre_CAF1 59613 90 - 1 --------GGCUGGACUUUCGGGUAAGCACUUAAGCCAAUUUGAUGUGAAGUGAACUUUUGCGGCUUUGUUUACCUUGUGAUUAAGAACU----------------------ACGAGUUU --------((((.(......(((((((((...(((((.((.....))((((....))))...)))))))))))))).((........)).----------------------.).)))). ( -18.70) >DroYak_CAF1 64736 98 - 1 GAGGGGGAAGCUGGACUUUCGGGUUGGCACUUAAGCCAAUUUGAUGUGAAGUGAACUUUUGCGGCUUUGUUUACCUUGUGGUUAAGAGCU----------------------ACAACUUC ((((..(((((((.((..((((((((((......)))))))))).))((((....))))..))))))).......(((((((.....)))----------------------)))))))) ( -31.60) >DroAna_CAF1 89405 109 - 1 --------ACCGAGAGUCC---UUAAGCACUUAAGCCAAUUUGAAGUGAACUUUCGUUGUGCCGAUUUGUUUAUCUUGUGACUUUGGAUUUGGCCUCUCAGUUGGAAAGUUUAAGAGUUU --------.....(((..(---((((((......(((((((..((((((((..(((......)))...)))))((....)))))..)).))))).(((.....)))..)))))))..))) ( -22.50) >consensus ________GGCUGGACUUUCGGGUAAGCACUUAAGCCAAUUUGAUGUGAAGUGAACUUAUGCGGCUUUGUUUACCUUGCGGUUUAGAUCUAUGU__________________AUGAGUUU ..........(((((((.(.(((((((((...(((((........((((((....))).))))))))))))))))).).))))))).................................. (-17.75 = -18.37 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:34 2006