Locus 6032

Sequence ID X_DroMel_CAF1
Location 15,495,345 – 15,495,451
Length 106
Max. P 0.803130
window9803

overview

Window 3

Location 15,495,345 – 15,495,451
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 95.46
Mean single sequence MFE -31.08
Consensus MFE -27.04
Energy contribution -27.88
Covariance contribution 0.84
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.87
SVM decision value 0.62
SVM RNA-class probability 0.803130
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15495345 106 - 22224390
AAUAUUGGAAAUUAGCGUAUGCGACGGCGAAAUUAGCCGCUGAAUUAUGCUGGUUGGCGGGUAUCUGGGAUGCAAAUAGAAUGUCCUGCCAUAAUUUAACCUGUCU
......((.((((((((((..((.((((.......)))).))...))))))))))((((((((((((.........))).))).)))))).........))..... ( -32.10)
>DroSec_CAF1 55455 106 - 1
AAUAUUGGAAAUUAGCGUAUGCGACGGCGGAAUUAGCCGCUGAAUUAUGCUGGUUGGCGGGUAUCUGGGAUGCAAAUAGAAUGUCCUGCCAUAAUUUAACCUGCCU
......((.((((((((((.....((((((......))))))...))))))))))((((((((((((.........))).))).)))))).........))..... ( -32.80)
>DroSim_CAF1 68062 106 - 1
AAUAUUGGAAAUUAGCGUAUGCGACGGCGGAAUUAGCCGCUGAAUUAUGCUGGUUGGCGGGUAUCUGGGAUGCAAAUAGAAUGUCCUGCCAUAAUUUAACCUGCCU
......((.((((((((((.....((((((......))))))...))))))))))((((((((((((.........))).))).)))))).........))..... ( -32.80)
>DroEre_CAF1 56640 104 - 1
AAUAUUGGAAAUUAGCGUAUACGGCGACGGAAUUAGCCGCUGAAUUAUGCUGGUUGGCGG--AUCUGGGAUGCAAAUAGAAUGUCCUGCCAUAAUUUAACCUGCCU
......((.((((((((((..(((((.(.......).)))))...))))))))))(((((--(((((.........))))...))).))).........))..... ( -26.80)
>DroYak_CAF1 62013 104 - 1
AAUAUUGGAAAUUAGCGUGUGCGACGGCGGAAUUAGCCGCUGAAUUAUGCUGGUUGGCGG--UUCUGGGAUGCAAAUAGAAUGUCCUGCGAUCAUUUAACCUGCCU
.........((((((((((.....((((((......))))))...))))))))))(((((--((....((((((............))).)))....)))).))). ( -30.90)
>consensus
AAUAUUGGAAAUUAGCGUAUGCGACGGCGGAAUUAGCCGCUGAAUUAUGCUGGUUGGCGGGUAUCUGGGAUGCAAAUAGAAUGUCCUGCCAUAAUUUAACCUGCCU
......((.((((((((((.....((((((......))))))...))))))))))((((((..((((.........))))....)))))).........))..... (-27.04 = -27.88 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:30 2006