Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,673,477 – 1,673,597 |
Length | 120 |
Max. P | 0.684339 |
Location | 1,673,477 – 1,673,597 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -13.24 |
Energy contribution | -15.96 |
Covariance contribution | 2.72 |
Combinations/Pair | 1.08 |
Mean z-score | -2.04 |
Structure conservation index | 0.46 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1673477 120 + 22224390 CAAUAAACGAAAUGCUCUUCGGGAGCAUCUUGUCCCAUUUCACGACCAAGAAAAAAAAAAAAAAGUAAAACCAGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAUCUGCAUUGGUACAGU ......((..(((((..(((((.(((.(((((((.........)).)))))......................(((((....)))))........))).)))))...))))).))..... ( -21.30) >DroSec_CAF1 7573 119 + 1 CAAUGGACGAAAUGCUCUUCGGUAGCAUCUUGUCCCAUUUCACGACCAAGAAAAA-AAAAGAAAGUAAAACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAGCUGCAUUGGUACAGU ....((((((.((((((....).))))).))))))......((.(((((......-..............((((((((....))))))).)..(((((.....)))))..)))))...)) ( -33.20) >DroSim_CAF1 8359 117 + 1 CAAUGGACGAAAUGCUCUUCGGUAGCAUCUUGUCCCAUUUCACGACCAAGAAAA--AAAAGAAAGUAA-ACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAGCUGCAUUGGUACAGU ....((((((.((((((....).))))).))))))......((.(((((.....--............-.((((((((....))))))).)..(((((.....)))))..)))))...)) ( -33.20) >DroEre_CAF1 11126 116 + 1 CGCUGGACGAGUUGCUCUUGAGUAGCAUCUUGUCCCAUUUCACGUCCCACGA----CCAAGAAAGUAAAAACGGAAUUAAUUAAUUCCGCGGAUAGCUGUCGAAGCGCCAUUGGUACGGC .((.(((((((.(((((....).)))).)))))))..............(((----((((...........(((((((....))))))).((...(((.....))).)).))))).)))) ( -35.30) >DroYak_CAF1 9780 91 + 1 ------------------CGAGGAGCAUCUUGUCCCAUUUCA-------CGA----CCAAGAAAGUACAACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCAAAGCUCCAUUGGUACGAC ------------------((((((((.(((((((........-------.))----.)))))..(.(((...((((((....))))))((.....))))))...))))).)))....... ( -21.80) >consensus CAAUGGACGAAAUGCUCUUCGGUAGCAUCUUGUCCCAUUUCACGACCAAGAAAA__AAAAGAAAGUAAAACCGGAAUUAAUUAAUUCCGCGAAUAGCUGUCGAAGCUGCAUUGGUACAGU ....((((((.(((((.......))))).))))))....................................(((((((....)))))))......((((((.((......)).).))))) (-13.24 = -15.96 + 2.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:13 2006