| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,483,677 – 15,483,773 |
| Length | 96 |
| Max. P | 0.912059 |
| Location | 15,483,677 – 15,483,773 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 62.16 |
| Mean single sequence MFE | -21.29 |
| Consensus MFE | -9.50 |
| Energy contribution | -11.25 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15483677 96 - 22224390 GCCAGUGCAAAGUCCAGUGGCGUGGUCAUCAAAAAAAAAAAAAGGGAGGGUUCGGUUAAUCCUCUCAAAAGUAGUGAUUUAAAUUAAAAAUAAAAG ((((.((.......)).))))......................(((((((((.....))))))))).............................. ( -19.30) >DroSec_CAF1 43974 91 - 1 GCCAGUGCAAAGUCCAGUGGCGUGGUCAUCAAAAAAAA-UAGAGAGAGGG---GGCUUAUCCUCUCGCAAUUAGUGAUACAAAU-AAAAAUAAAAG ((((.((.......)).))))...((.((((.....((-(.(.(((((((---......))))))).).)))..))))))....-........... ( -21.10) >DroEre_CAF1 45721 73 - 1 GCCAGUGCAAAAUCCAGUGGCGUGGUCAUCAGAAGG-----------GGGCGUGGUUGUCC-CCAGUC-----AUGGCAAAAAA-CGAAAU----- ((((.((.......)).))))...(((((..((.((-----------(((((....)))))-))..))-----)))))......-......----- ( -24.20) >DroYak_CAF1 44378 73 - 1 GCCAGUGCAAAGUUCAGUGGCGUGGUCACCAAAAAA-----------GGGGGCAGUUUACUCCCUCUCACAUAAUGAUUAAAAA------------ ((((.((.......)).)))).((((((.......(-----------(((((.((....)))))))).......))))))....------------ ( -20.54) >consensus GCCAGUGCAAAGUCCAGUGGCGUGGUCAUCAAAAAA___________GGG_GCGGUUUACCCCCUCUCAA_UAAUGAUAAAAAA_AAAAAU_____ ((((.((.......)).))))......................(((((((.........))))))).............................. ( -9.50 = -11.25 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:23 2006