Locus 6024

Sequence ID X_DroMel_CAF1
Location 15,471,261 – 15,471,367
Length 106
Max. P 0.683975
window9790

overview

Window 0

Location 15,471,261 – 15,471,367
Length 106
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 94.34
Mean single sequence MFE -22.72
Consensus MFE -19.44
Energy contribution -19.50
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 0.31
SVM RNA-class probability 0.683975
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15471261 106 - 22224390
AGCUGAAGAUUAUGUGCUAGAAAUUAAUAACGCGC-UGAGUCAAGCAUGAGAAUGGCGACAUAAAUCUUAUGGUGAUUUUAAAAAGAUUUGCAUAUAAUUUUCCUCA
....(((((((((((((........(((.......-.((((((..((((((((((....)))...))))))).)))))).......))).))))))))))))).... ( -26.06)
>DroSec_CAF1 32085 105 - 1
AGCUGAAGAUUAUGUGCUAGAAAUUAAUAACGCGC-UGAGUCAAGCAUGAGAAUGGCGACAUAAAUCUUGUGAUGAUUUUAAAAAGAUUUGCAUAUAAUU-UCCUCG
....(((((((((((((........(((.......-.((((((..((..((((((....)))...)))..)).)))))).......))).))))))))))-)..)). ( -20.56)
>DroEre_CAF1 34141 105 - 1
AGCUGAAGAUUAUGUGCUAGAAAUUAAUAACGCGC-UGAGUCAACCAUGAGAAUGGCCACAUAAAUCUUAAGGUGAUUUUAAAAAGAUUUGCAUAUAAUU-UCCACA
.(.((.(((((((((((........(((.......-.((((((.((.((((((((....)))...))))).)))))))).......))).))))))))))-).))). ( -20.76)
>DroYak_CAF1 32274 106 - 1
AGCUGAAGAUUAUGUGCUAGAAAUUAAUAACGCAUGUGAGUCAAGCAUGAGAAUGGCCACAUAAAUCUUAUGAUGAUUUUAAAAAGAUUUGCAUAUAAUU-UCCACA
.(.((.(((((((((((................(((((.((((..(....)..)))))))))(((((((.(((.....)))..)))))))))))))))))-).))). ( -23.50)
>consensus
AGCUGAAGAUUAUGUGCUAGAAAUUAAUAACGCGC_UGAGUCAAGCAUGAGAAUGGCCACAUAAAUCUUAUGAUGAUUUUAAAAAGAUUUGCAUAUAAUU_UCCACA
....((.((((((((((.(....)......(......((((((..((((((((((....)))...))))))).))))))......)....)))))))))).)).... (-19.44 = -19.50 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:18 2006