| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,470,881 – 15,470,986 |
| Length | 105 |
| Max. P | 0.967030 |
| Location | 15,470,881 – 15,470,986 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.10 |
| Mean single sequence MFE | -33.14 |
| Consensus MFE | -20.25 |
| Energy contribution | -20.61 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.967030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15470881 105 + 22224390 GGCAUACGCGGCGUAUGCGCAACAUUCGAGUGC-GAGUGCGAGUACGACAUGGCGUAUACGCAGUGUGGACAGUAGGGUAGCUUAAGCCACCGAAAGGAAGCCGUC (((..((((.((((((((((..((((((....)-)))))((....)).....)))))))))).))))((....((((....))))..)).((....))..)))... ( -40.70) >DroSec_CAF1 31732 83 + 1 GGCAUACGCGGCGUAUGCGCAACAUUCGAGUG---------------------CGUAUACGCAAUGUGGACAGUAGGUUAGCUUUAGCCGCCGUAAGGAAA--GCC (((.((((..(((((((((((.(......)))---------------------)))))))))..)))).......(((((....))))).((....))...--))) ( -31.30) >DroEre_CAF1 33765 91 + 1 GGCAUACGCGGCGUAUGCGCAACAUUCGAGUGC-------------GACAUGGCGUAUACGCAAUGUGGACAGUAGGGCAGCUUAAGUCGCCGAAAGGAAA--ACC (((.((((..((((((((((..((((((....)-------------)).)))))))))))))..))))(((..((((....)))).)))))).........--... ( -31.60) >DroYak_CAF1 31917 91 + 1 GGCAUACGCGGCGUAUGCGCAACAUUCGUGUGC-------------GACAUGGCGUAUACGCAACGUGGACGGUUGGUUAGCUUAAGCCGCCGUAAGGAAA--ACC ....((((..((((((((((..((((((....)-------------)).)))))))))))))..)))).(((((.((((......))))))))).......--... ( -35.60) >DroMoj_CAF1 58792 97 + 1 GGCCAAUGAGGCGUAUGCGCAAUGUUUGCCUUUUGUCCACAGC---AACGUGUCGUAUGCGCAAUAUUUGCAGAGC----GCUUCUUCCGUUUUUAUGGGA--CAC .((.((((..(((((((((..(((((.((............))---)))))..)))))))))..)))).)).....----.....((((((....))))))--... ( -26.50) >consensus GGCAUACGCGGCGUAUGCGCAACAUUCGAGUGC_____________GACAUGGCGUAUACGCAAUGUGGACAGUAGGGUAGCUUAAGCCGCCGUAAGGAAA__ACC (((.((((..((((((((((................................))))))))))..))))...(((......)))...))).((....))........ (-20.25 = -20.61 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:17 2006