Locus 6021

Sequence ID X_DroMel_CAF1
Location 15,455,558 – 15,455,658
Length 100
Max. P 0.944136
window9786

overview

Window 6

Location 15,455,558 – 15,455,658
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 81.07
Mean single sequence MFE -10.77
Consensus MFE -8.16
Energy contribution -8.16
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.76
SVM decision value 1.34
SVM RNA-class probability 0.944136
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15455558 100 - 22224390
AAAAACCUCUACAAAUAUGCAACAGCAACAUUGUUGAUUAGUUAGUUCAACAACGCAGCAACAAGAAAUCAACAACACUCGAAAAUUUCGCUUUGAAUUC
...................(((.(((....(((((((((.(((.((((......).))))))....))))))))).....((.....))))))))..... ( -11.50)
>DroSec_CAF1 15859 80 - 1
AAAAACCUCCACAAAUAAGCAACAGC---AUUGUUGAUUAA-----------------AAACAAGAAAUCAACAACACUCGAACAUCUCGCUUUGAAUUC
...................(((.(((---.(((((((((..-----------------........))))))))).....((.....))))))))..... ( -10.50)
>DroSim_CAF1 16033 80 - 1
AAAAACCUCCACAAAUAAGCAACAGC---AUUGUUGAUUAA-----------------AAACAAGAAAUCAACAACACUCGAAAAUAUCGCUUUGAAUUC
...................(((.(((---.(((((((((..-----------------........))))))))).....((.....))))))))..... ( -10.30)
>consensus
AAAAACCUCCACAAAUAAGCAACAGC___AUUGUUGAUUAA_________________AAACAAGAAAUCAACAACACUCGAAAAUAUCGCUUUGAAUUC
...................(((.(((....(((((((((...........................))))))))).....((.....))))))))..... ( -8.16 =  -8.16 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:15 2006