Locus 6020

Sequence ID X_DroMel_CAF1
Location 15,452,121 – 15,452,211
Length 90
Max. P 0.841428
window9785

overview

Window 5

Location 15,452,121 – 15,452,211
Length 90
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 74.72
Mean single sequence MFE -17.50
Consensus MFE -14.54
Energy contribution -14.32
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.06
Structure conservation index 0.83
SVM decision value 0.75
SVM RNA-class probability 0.841428
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15452121 90 - 22224390
ACAAAAAAAAAAAAAGGAAUUGCAGACCAUUAGUUUGUUGUCUUAAUGCCGCAAGAUGCAAU-GGCGCACCACACAAAUUGGUCGAA-AAGG
........................(((((...((((((.((.....((((((.....))...-))))....)))))))))))))...-.... ( -15.90)
>DroEre_CAF1 15296 81 - 1
AAAAAA----------GAAAUGGAGACCAUUAGUUUGUUGUCUUAAUGCCGCGCGUUGCGAU-GGCACACCACACAAAUUGGUCGAAGAGGG
......----------........(((((...((((((.((.....((((((((...))).)-))))....)))))))))))))........ ( -20.40)
>DroYak_CAF1 13235 72 - 1
ACAGAA----------GAAAUGGAGACCAUUAGUUUGCUGUCUUAAUGCCG---------AUGGGCACACCACACAAAUUGGUCGCAAAAU-
......----------........(((((...(((((.(((.....((((.---------...))))....))))))))))))).......- ( -16.20)
>consensus
ACAAAA__________GAAAUGGAGACCAUUAGUUUGUUGUCUUAAUGCCGC__G_UGC_AU_GGCACACCACACAAAUUGGUCGAA_AAGG
........................(((((...(((((.(((.....((((.............))))....)))))))))))))........ (-14.54 = -14.32 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:14 2006