| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,444,677 – 15,444,770 |
| Length | 93 |
| Max. P | 0.648045 |
| Location | 15,444,677 – 15,444,770 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.59 |
| Mean single sequence MFE | -14.33 |
| Consensus MFE | -9.35 |
| Energy contribution | -9.52 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15444677 93 + 22224390 UGAGAUAAUUUAAUAAGCGUUAAAAUGCCCGAGUUAUGUCAUUAUAAAAAUGAACGAACAA-------AAAAUG---------CCAGGCAUAAAUUAAUGC-CGCUUGCU--- .............(((((..............(((...(((((.....)))))...)))..-------......---------...(((((......))))-))))))..--- ( -17.20) >DroVir_CAF1 36885 85 + 1 UGAGAUAAUUUAAUAAGCGUUAAAAUGCUCGAGUUAUGUCAUUAUAAAAAU-AACGAA----------AAAAU--------------GCAUAAAUUAAUG-GCAA--GGAAUG (((.(((((((....(((((....))))).))))))).)))..........-......----------....(--------------((...........-))).--...... ( -10.80) >DroPse_CAF1 5384 105 + 1 UGAGAUAAUUUAAUAAGCGUUAAAAUGCUCGAGUUAUGUCAUUAUAAAAAUGAACGAAUGAAGAACGAAAAAAACCACAGAGCCCUGGCAUAAAUUAAUGC-UCCA------- ...............((((((((.(((((((..((((.(((((.....)))))....))))....))).........(((....)))))))...)))))))-)...------- ( -17.20) >DroWil_CAF1 32456 80 + 1 UGAGAUAAUUUAAUAAGCGUUAAAAUGCUCGAGUUAUGUCAUUAUAAAAAAUAACGAA----------AAACU--------------GCAUAAAUUAACAG-AGA-------- (((.(((((((....(((((....))))).))))))).))).................----------...((--------------(..........)))-...-------- ( -10.30) >DroMoj_CAF1 22690 86 + 1 UGAGAUAAUUUAAUAAGCGUUAAAAUGCUCGAGUUAUGUCAUUAUAAAAAU-AACGAA----------AAAAU--------------GCAUAAAUUAAUGCGCCU--GGAAUG (((.(((((((....(((((....))))).))))))).)))..........-......----------.....--------------((((......))))....--...... ( -13.30) >DroPer_CAF1 5944 105 + 1 UGAGAUAAUUUAAUAAGCGUUAAAAUGCUCGAGUUAUGUCAUUAUAAAAAUGAACGAAUGAAGAACGAAAAAAACCACAGAGCCCUGGCAUAAAUUAAUGC-UCCA------- ...............((((((((.(((((((..((((.(((((.....)))))....))))....))).........(((....)))))))...)))))))-)...------- ( -17.20) >consensus UGAGAUAAUUUAAUAAGCGUUAAAAUGCUCGAGUUAUGUCAUUAUAAAAAUGAACGAA__________AAAAU______________GCAUAAAUUAAUGC_CCC________ (((.(((((((....(((((....))))).))))))).)))........................................................................ ( -9.35 = -9.52 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:11 2006