Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,443,728 – 15,443,820 |
Length | 92 |
Max. P | 0.971892 |
Location | 15,443,728 – 15,443,820 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 93.21 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -20.68 |
Energy contribution | -21.36 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.87 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15443728 92 - 22224390 CAUGUUGUUGAUCCCG--CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCUUGGAAAUC ......(..(((((((--(((...((......)).........((((.(((((.....))))).))))..))))..))))))..)......... ( -21.50) >DroSec_CAF1 4644 92 - 1 CAUGGUGUUGAUCCCG--CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCGUGGAAACC (((((....(((((((--(((...((......)).........((((.(((((.....))))).))))..))))..)))))).)))))...... ( -27.20) >DroSim_CAF1 4649 92 - 1 CAUGGUGUUGAUCCCG--CACCUGGUAAUAUGACAUGAAAUCCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCGUGGAAACC (((((....(((((((--(((..((................))((((.(((((.....))))).))))..))))..)))))).)))))...... ( -27.59) >DroEre_CAF1 7214 92 - 1 CAUGGUGUUGAUCCCA--CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCUGUGGAAACC ((.(((((.......)--))))))........(((.(((((((((((.(((((.....))))).)))).((....))))))))))))(....). ( -23.20) >DroYak_CAF1 4676 88 - 1 CAU------GAUCCCACACACCUGGUAAUAUGACAUGAUAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCUGUGGAAACC ...------....(((((..(((((((((((......))))..((((.(((((.....))))).))))...))).)))).....)))))..... ( -19.50) >consensus CAUGGUGUUGAUCCCG__CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCGUGGAAACC (((((....((((((...(((...((......)).........((((.(((((.....))))).))))..)))...)))))).)))))...... (-20.68 = -21.36 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:10 2006