Locus 6016

Sequence ID X_DroMel_CAF1
Location 15,441,257 – 15,441,365
Length 108
Max. P 0.526100
window9780

overview

Window 0

Location 15,441,257 – 15,441,365
Length 108
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 78.18
Mean single sequence MFE -46.23
Consensus MFE -29.02
Energy contribution -28.44
Covariance contribution -0.58
Combinations/Pair 1.47
Mean z-score -1.31
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.526100
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15441257 108 + 22224390
CGGCCAGCUGGGGAUCCGUUUUGCCAUCGGGA---AG------UGGUGCCUCCAGUAGCGAACUGAACAACUCCGUCUGCAGGGCCGUGUAUUUGGCCACCUUUCCGGCCAGAGCCA
(((((.(((((((..(((((((.(....).))---))------)))...))))))).(((.((.((.....)).)).)))..)))))((..(((((((........)))))))..)) ( -40.20)
>DroVir_CAF1 30049 111 + 1
CCGCCAGCUGCGGAUCCGGCUUGCCGCCGACCAGAGC------CGGCGGCUCCAGCAGCGAGCUAAACAGUUCCGUCUGCAGCGCCGUAUACUUGGCUAUUUUGCCGGCCAGCGCCA
.(((..(((((((((...(((.(((((((........------)))))))...))).(.(((((....)))))))))))))))((((....)..(((......))))))..)))... ( -48.70)
>DroGri_CAF1 15825 111 + 1
CGGCCAGCUGUGGAUCCGGUUUGCCACUCGCCGUCAA------UGGUGGCUCCAGCAGCGAACUAAACAGUUCCGUUUGCAGUGCCGUAUAUUUGGCGAUCUUGCCGGCCAGGGCCA
.((((.((((.(((((.((...((((((.........------.)))))).)).((((((((((....)))).)).))))...((((......)))))))))...))))...)))). ( -42.40)
>DroYak_CAF1 2163 108 + 1
CGGCCAGCUGGGGAUCCGUUUUGCCAUCGGGC---AG------CGGUGCCUCCAGCAGCGAACUGAACAGCUCCGUUUGCAGUGCCGUAUAUUUGGCCACCUUUCCGGCCAAAGCCA
(((((.(((((((..((((..((((....)))---))------)))...))))))).((((((.((.....)).)))))).).))))....(((((((........))))))).... ( -48.70)
>DroMoj_CAF1 18422 108 + 1
CGGCCAGUUGGGGAUCCGUUUUGCCGUUGGUC---GC------CGCCGGUUCCAGCAGGGAGCUGAACAGUUCCGUCUGCAAUGCCGUGUACUUGGCUAUCUUGCCGGCCAGGGCCA
.((((....((.((((((......))..))))---.)------)((((((....((((((((((....))))))..))))...((((......))))......))))))...)))). ( -45.70)
>DroPer_CAF1 2251 114 + 1
CGGUCAGCAUCGGAUCGAACUUGCCGCCGGGC---UGGCUCUGGGGCGGCUCCAGCAGCGAGCUGAACAGCUCCGUCUGCAGGGCCGUGUACUUGGCUAUCUUUCCGGCCAGGGCCA
.(((((((.((((..((.......))))))))---)))))....((((((.((.((((((((((....)))).)).)))).))))).....(((((((........)))))))))). ( -51.70)
>consensus
CGGCCAGCUGGGGAUCCGUUUUGCCACCGGGC___AG______CGGCGGCUCCAGCAGCGAACUGAACAGCUCCGUCUGCAGUGCCGUAUACUUGGCUAUCUUGCCGGCCAGGGCCA
((((.......(((........(((((((..............)))))))))).((((.(((((....)))))...))))...))))....(((((((........))))))).... (-29.02 = -28.44 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:10 2006