Locus 6015

Sequence ID X_DroMel_CAF1
Location 15,436,133 – 15,436,223
Length 90
Max. P 0.945301
window9779

overview

Window 9

Location 15,436,133 – 15,436,223
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 89.02
Mean single sequence MFE -36.77
Consensus MFE -27.94
Energy contribution -28.00
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -2.75
Structure conservation index 0.76
SVM decision value 1.35
SVM RNA-class probability 0.945301
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15436133 90 - 22224390
GUGGGUGGUGGUGGGAGGUGGUGAUAGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGCUCGGCGGAGAUCCGAAUCCGCA
((((((...(.((((..(.((((.....((((((((((.......)))))))))).....)))))..)))).)((....))..)))))). ( -36.30)
>DroSec_CAF1 26147 87 - 1
GUGGGUGGUGGUGG---GUGGUGAUUGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGCUCGACGGAGAUCCGAAUCCGCA
((((((.(.(.(((---(((....((((((((.((..(....)..)).))))))))....)))))).).)..(((....))).)))))). ( -41.60)
>DroEre_CAF1 24143 84 - 1
GUGGGUGGUGGUA------GGUGAUAGGUGGUGUCUGUGGGUGUGGCGGCUACCGAAAGACGCGCAGACCGCCGGAGAUCCGAAUCCACA
((((((..(((..------.......(((((..((((((.((.(..(((...)))..).)).)))))))))))......))).)))))). ( -34.66)
>DroYak_CAF1 24116 84 - 1
GUGGGUGGUGGGA------GGUGAUAGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGAACGGCGGAGAUCCGAGUCCACA
((((((..((((.------(......((((((.((..(....)..)).))))))......).))))..))..(((....)))...)))). ( -34.50)
>consensus
GUGGGUGGUGGUA______GGUGAUAGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGAUCGGCGGAGAUCCGAAUCCACA
((((((.............((((.....((((((((((.......)))))))))).....))))........(((....))).)))))). (-27.94 = -28.00 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:09 2006