Locus 6014

Sequence ID X_DroMel_CAF1
Location 15,433,881 – 15,433,997
Length 116
Max. P 0.950967
window9777 window9778

overview

Window 7

Location 15,433,881 – 15,433,997
Length 116
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 92.05
Mean single sequence MFE -29.57
Consensus MFE -26.36
Energy contribution -26.99
Covariance contribution 0.63
Combinations/Pair 1.06
Mean z-score -1.52
Structure conservation index 0.89
SVM decision value 0.38
SVM RNA-class probability 0.713006
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15433881 116 + 22224390
UU-AUUUUCCUCAGUGCAUUUCUUUUCA-AUUUCAGAGUUGGAACCGAACACUAAACACUGAAAUCCGAAAACUGAAACUGGAACGGAGCGCUCCACUUUUGGCCGAGCCGCCUGCAU
..-..........(((((.....(((((-.((((((..(((((.....................)))))...)))))).)))))(((..((..(((....))).))..)))..))))) ( -24.70)
>DroSec_CAF1 23953 116 + 1
UC-AUUUUUCUCAGUGCACUUCUUUUCA-AUUUCAGAGUUGGAAACGAACACUAAGCACUGAAAUCCGAAAACUGAAACUGGAACGGAGCGCUCCACUUUUGGCCGAGCCGCCUGCAU
((-(.((((((((((((..(((((((((-(((....))))))))).)))......))))))).....))))).)))........(((.((((((..(....)...))).))))))... ( -28.10)
>DroEre_CAF1 21822 117 + 1
UC-AUUUUGCGCAGUGCAUUUAUUUUCAAAUUUCAGCGUUGAAACCGAACACUAAACACUGAAAUCUGAAAACUAAAACUGGAACGGAGCGUUCCACUUUUGGCCGGGCCGCCUGCAU
..-.......((((.((.....((((((.(((((((.(((..............))).))))))).))))))((((((.(((((((...))))))).)))))).......)))))).. ( -35.84)
>DroYak_CAF1 21908 118 + 1
UUAAUUUUUCUCAGUGCAUUUAUUUUCAAAUUUCAGAGUUGGAACUGAACACUAAACACUGAAAUCUGAAAACUGAAACUGGAACGGAGCGUUCCACUUUUGGCCGGGCCGCCUGCAU
...........(((.((.....((((((.(((((((.(((..............))).))))))).))))))(..(((.(((((((...))))))).)))..).......)))))... ( -29.64)
>consensus
UC_AUUUUUCUCAGUGCAUUUAUUUUCA_AUUUCAGAGUUGGAACCGAACACUAAACACUGAAAUCCGAAAACUGAAACUGGAACGGAGCGCUCCACUUUUGGCCGAGCCGCCUGCAU
...........(((.((.....((((((.(((((((.(((..............))).))))))).))))))((((((.(((((((...))))))).)))))).......)))))... (-26.36 = -26.99 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 15,433,881 – 15,433,997
Length 116
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 92.05
Mean single sequence MFE -35.64
Consensus MFE -31.15
Energy contribution -31.40
Covariance contribution 0.25
Combinations/Pair 1.06
Mean z-score -2.17
Structure conservation index 0.87
SVM decision value 1.41
SVM RNA-class probability 0.950967
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15433881 116 - 22224390
AUGCAGGCGGCUCGGCCAAAAGUGGAGCGCUCCGUUCCAGUUUCAGUUUUCGGAUUUCAGUGUUUAGUGUUCGGUUCCAACUCUGAAAU-UGAAAAGAAAUGCACUGAGGAAAAU-AA
.....(((......))).(((.(((((((...))))))).)))..((((((....((((((((......(((((((.((....)).)))-)))).......))))))))))))))-.. ( -31.92)
>DroSec_CAF1 23953 116 - 1
AUGCAGGCGGCUCGGCCAAAAGUGGAGCGCUCCGUUCCAGUUUCAGUUUUCGGAUUUCAGUGCUUAGUGUUCGUUUCCAACUCUGAAAU-UGAAAAGAAGUGCACUGAGAAAAAU-GA
.....(((......))).(((.(((((((...))))))).)))...........(((((((((......((((((((.......)))).-)))).......))))))))).....-.. ( -30.52)
>DroEre_CAF1 21822 117 - 1
AUGCAGGCGGCCCGGCCAAAAGUGGAACGCUCCGUUCCAGUUUUAGUUUUCAGAUUUCAGUGUUUAGUGUUCGGUUUCAACGCUGAAAUUUGAAAAUAAAUGCACUGCGCAAAAU-GA
..(((((((((...)))((((.(((((((...))))))).)))).(((((((((((((((((((.((........)).)))))))))))))))))))....)).)))).......-.. ( -45.00)
>DroYak_CAF1 21908 118 - 1
AUGCAGGCGGCCCGGCCAAAAGUGGAACGCUCCGUUCCAGUUUCAGUUUUCAGAUUUCAGUGUUUAGUGUUCAGUUCCAACUCUGAAAUUUGAAAAUAAAUGCACUGAGAAAAAUUAA
.(((((((......))).(((.(((((((...))))))).)))..(((((((((((((((.(((..............))).)))))))))))))))...)))).............. ( -35.14)
>consensus
AUGCAGGCGGCCCGGCCAAAAGUGGAACGCUCCGUUCCAGUUUCAGUUUUCAGAUUUCAGUGUUUAGUGUUCGGUUCCAACUCUGAAAU_UGAAAAGAAAUGCACUGAGAAAAAU_AA
.(((((((......))).(((.(((((((...))))))).)))...((((((((((((((.(((..(........)..))).))))))))))))))....)))).............. (-31.15 = -31.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:08 2006