Locus 6013

Sequence ID X_DroMel_CAF1
Location 15,433,459 – 15,433,554
Length 95
Max. P 0.537198
window9776

overview

Window 6

Location 15,433,459 – 15,433,554
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.86
Mean single sequence MFE -26.12
Consensus MFE -21.22
Energy contribution -21.00
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.81
SVM decision value 0.01
SVM RNA-class probability 0.537198
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15433459 95 - 22224390
------------------------G-CUCCGGGGCGUUGGCGGUUCGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
------------------------(-((....)))..((((((....))(((..(((.....)))...(((((.....))))).....)))....))))..................... ( -22.30)
>DroPse_CAF1 26570 117 - 1
GCUACAGCUUCAGCUUUAGCUUUGGUUUU-GGGGCGUUGGCG--UUGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
((((.(((....))).))))..(((((((-..(((((((((.--..))))))..(((.....)))...(((((.....))))).....))).)))))))..................... ( -33.00)
>DroSec_CAF1 23534 94 - 1
------------------------G-CUC-GGGGCGUUGGCGGUUCGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
------------------------(-((.-..((((((((((...)))))))..(((.....)))...(((((.....))))).....)))...)))....................... ( -22.80)
>DroEre_CAF1 21366 94 - 1
------------------------G-CUC-GGGGCGUUGGCGGCUCGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
------------------------(-((.-..((((((((((...)))))))..(((.....)))...(((((.....))))).....)))...)))....................... ( -22.80)
>DroYak_CAF1 21461 94 - 1
------------------------G-CUC-GGGGCGUUGGCGGUUCGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
------------------------(-((.-..((((((((((...)))))))..(((.....)))...(((((.....))))).....)))...)))....................... ( -22.80)
>DroPer_CAF1 26795 117 - 1
GCUACAGCUUCAGCUUUAGCUUUGGUUUU-GGGGCGUUGGCG--UUGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
((((.(((....))).))))..(((((((-..(((((((((.--..))))))..(((.....)))...(((((.....))))).....))).)))))))..................... ( -33.00)
>consensus
________________________G_CUC_GGGGCGUUGGCGGUUCGCCGGCAAAGUGUGAAACUAAUUUGUCAGCAUGACAAUAACAGCCAAAAGCCAUAAACAUCAUAAUAAUAUUCA
................................(((...((((...))))(((..(((.....)))...(((((.....))))).....)))....)))...................... (-21.22 = -21.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:06 2006