Locus 6012

Sequence ID	X_DroMel_CAF1
Location	15,432,639 – 15,432,754
Length	115
Max. P	0.720132

overview

Window 5

Location	15,432,639 – 15,432,754
Length	115
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	80.03
Mean single sequence MFE	-34.67
Consensus MFE	-23.82
Energy contribution	-24.76
Covariance contribution	0.94
Combinations/Pair	1.08
Mean z-score	-1.75
Structure conservation index	0.69
SVM decision value	0.40
SVM RNA-class probability	0.720132
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15432639 115 + 22224390
CAGAUCGGACCCAAUCCACGAUCGGAGGCUUUGUGUUUGACUAUGGCUAUGGCUAUGGCUCUAGCUCAAAGCGGCUGCAAUCGCAUGCGAUUUGCAUGCAAUUGGCACUGAAACA
....((((..(((((....((((((..((((((.(((.(((((((((....))))))).)).))).))))))..)))..)))((((((.....)))))).)))))..)))).... ( -42.30)
>DroSec_CAF1 22748 103 + 1
CAGAUCGGACCCAAUACCCGAUCGGAGGCUUUGU------------CUAUGGCUUUGGCUCUAGCUCAACGCGGCUGCCAUCGCAUGCGAUUUGCAUGCAAUUGGCACUGAAACA
..((((((.........))))))((((.(...((------------.....))...).)))).........(((.(((((..((((((.....))))))...))))))))..... ( -35.20)
>DroEre_CAF1 20552 97 + 1
CAGAUCGGACCCAAUCUCCGAUCGGAGGCUUUGUGUUU------------GGCUUU------GGCUCAAAGCGGCUGCAAUCGCGUGCGAUUUGCAUGCAACUGGCACUGAAACA
..(((((((.......)))))))...(..((.((((..------------((((((------(...)))))).((((((((((....))).))))).))..)..)))).))..). ( -32.30)
>DroYak_CAF1 20608 91 + 1
CAGAUCGGAUCCAAUCCCCGAUCGAAGGCUUUGUGUUU------------------------GGCUCAAAGCGGCUGCACUCGCAUGCGAUUUGCAUGCAACUGGCACUGAAACA
..((((((.........))))))....((((((.(...------------------------..).))))))((.(((....((((((.....)))))).....)))))...... ( -28.90)
>consensus
CAGAUCGGACCCAAUCCCCGAUCGGAGGCUUUGUGUUU____________GGCUUU______AGCUCAAAGCGGCUGCAAUCGCAUGCGAUUUGCAUGCAACUGGCACUGAAACA
..((((((.........))))))....((((((.(((.........................))).))))))((.(((....((((((.....)))))).....)))))...... (-23.82 = -24.76 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:05 2006