| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,430,044 – 15,430,139 |
| Length | 95 |
| Max. P | 0.974460 |
| Location | 15,430,044 – 15,430,139 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.21 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -22.88 |
| Energy contribution | -22.99 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.974460 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15430044 95 - 22224390 AGGGGACGAUGGACGAUGGACAACACACGGUGGCAAAUCAACAACAGAAGCCGACGCCGCUGAGUUGCACAUUUCGUGGCCCCACUGUAAAUAAA .((((.(.(((((..(((..((((.(((((((((...((.......)).)))...)))).)).))))..)))))))).)))))............ ( -29.30) >DroSec_CAF1 20254 88 - 1 AGGGGACG-------AUGGACAACACACGGUGGCAAAGCAACAACAGAAGCCCCCGCCGCUGAGUUGCACAUUUCGGAGCCCCACUGUAAAAAUA .((((.((-------(((..((((.((((((((....((..(....)..))..)))))).)).))))..))..)))...))))............ ( -29.20) >DroEre_CAF1 18980 86 - 1 AGGGG------CACGAUGGACAGCAUACGGUGGCAAAUCAACAACAGAAA---ACGCCGCUGAGUUGCACAUUUCGUUGCCCCACUGUAAAGGCG .((((------(((((((..((((...(((((((...((.......))..---..))))))).))))..))..))).))))))............ ( -30.80) >consensus AGGGGACG____ACGAUGGACAACACACGGUGGCAAAUCAACAACAGAAGCC_ACGCCGCUGAGUUGCACAUUUCGUAGCCCCACUGUAAAAAAA .((((.........((((..((((...(((((((.....................))))))).))))..))))......))))............ (-22.88 = -22.99 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:04 2006