Locus 6010

Sequence ID X_DroMel_CAF1
Location 15,428,911 – 15,429,020
Length 109
Max. P 0.511043
window9773

overview

Window 3

Location 15,428,911 – 15,429,020
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.53
Mean single sequence MFE -27.35
Consensus MFE -23.36
Energy contribution -22.68
Covariance contribution -0.69
Combinations/Pair 1.14
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value -0.04
SVM RNA-class probability 0.511043
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15428911 109 + 22224390
CAUUGAAGGUUCCACCCUUCGAGUUUCUCACCUGGAAAAGCCC--CCU-C--------CGAAAAAGCGAUCAAUCAUUGAUUGAAAUCGCUGAGCAAUCACUGGCUAAUGUUGGAUAUAA
..(((((((......)))))))(((.(((...((((.......--..)-)--------))....(((((((((((...))))))..)))))))).)))..(..((....))..)...... ( -26.10)
>DroSec_CAF1 19099 109 + 1
CGUUGAAGGUUCCACCCUUCGAGUUUCUCACCUGGAAAAGCCC--CCU-C-------CCGAAAAAGCGAUCAAUCAU-GAUUGAAAUCGCUGAGCAAUCACUGGCUAAUGCUGGAUAUAA
..(((((((......))))))).........(..(...((((.--...-.-------.......((((((((((...-.)))))..)))))((....))...))))....)..)...... ( -26.00)
>DroEre_CAF1 17916 119 + 1
CAUUGAAGGUUACCCCUUUCGAGGUUCCCACCUGGAAAACCCCGAACUCCGAGCCCGCCCAAAAAGCGAUCAAUCAA-GAUUGAAAUCGCUGAGCAAUCACUAGCUAAUGCUGGGUAUAA
.......((((......((((.((((.((....))..)))).)))).....)))).((((....((((((((((...-.)))))..)))))((....))...(((....))))))).... ( -31.00)
>DroYak_CAF1 17508 117 + 1
CAUUGAAGGUU-CCCCUUUCGAGGUUCUCACCUGGAAAACCGCCCCCU-CAAACCCGCCCAAAAAGCGAUCAAUCAU-GAUUGAAAUCUCUGAGCAAUCACUAGCUAAUGCUGGAUAUAA
..((((.((..-(...((((.((((....)))).))))...)..)).)-)))....((.((.....((((((....)-))))).......)).)).....(((((....)))))...... ( -26.30)
>consensus
CAUUGAAGGUUCCACCCUUCGAGGUUCUCACCUGGAAAACCCC__CCU_C_______CCCAAAAAGCGAUCAAUCAU_GAUUGAAAUCGCUGAGCAAUCACUAGCUAAUGCUGGAUAUAA
..(((((((......)))))))((((.((.....)).)))).......................(((((((((((...))))))..))))).........(((((....)))))...... (-23.36 = -22.68 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:03 2006