Locus 6008

Sequence ID X_DroMel_CAF1
Location 15,425,699 – 15,425,801
Length 102
Max. P 0.740927
window9770

overview

Window 0

Location 15,425,699 – 15,425,801
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.71
Mean single sequence MFE -24.70
Consensus MFE -15.15
Energy contribution -15.57
Covariance contribution 0.42
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.61
SVM decision value 0.45
SVM RNA-class probability 0.740927
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15425699 102 - 22224390
-------UGUGUGUGCUCCAAUUUUCGUUUU-----CGCCGGCCUUUGAUUUGUUAACCAAAUAGUUUUCCAAGCUGUUUGUUUAUUUUAUUAGCAUUCGGCUACACACAUAU-U-----
-------((((((((...........(....-----)(((((...(((((....(((.(((((((((.....))))))))).)))....)))))...)))))))))))))...-.----- ( -25.10)
>DroPse_CAF1 17673 114 - 1
GCGUGUGUGUGUCUGCUCCAGUUUACGUUUU------GCCGGCCUUUGAUUUGUAAACCAAAUAGUUUUCCGCGCUGUUUGUUUAUUUAAUUAGCAUUUGGCUGUAGUCCGACCGUAAGA
(((.(((((...(((...)))..)))(..((------((.((((.((((((.((((((.(((((((.......)))))))))))))..)))))).....))))))))..).))))).... ( -23.50)
>DroSec_CAF1 15834 102 - 1
-------UGUGUGUGCUCCCAUUUUCGUUUU-----CGCUGGCCUUUGAUUUGUUAACCAAAUAGUUUGCCAAGCUGUUUGUUUAUUUAAUUAGCAUUCGGCUACGCACAUAU-U-----
-------.((((((((...............-----...((((.....(((((.....))))).....))))(((((..((((.........))))..)))))..))))))))-.----- ( -26.90)
>DroEre_CAF1 14605 97 - 1
-------UGU--GUGCUCCAAUUUUCGUUUUG------CCGGCCUUUGAUUUGUUAACCAAAUAGUUUCCCAAGCUGUUUGUUUAUUUAAUUAGCAUUCGGCAAUACUCA--C-U-----
-------...--..............((.(((------((((...((((((...(((.(((((((((.....))))))))).)))...))))))...))))))).))...--.-.----- ( -22.60)
>DroYak_CAF1 14390 105 - 1
-------UGU--GUGCUCCAAUUUUCGUUUCGCUUCGGCCGGCCUUUGAUUUGUUAACCAAAUAGUUUGCCAAGCUGUUUGUUUAUUUAAUUAGCAUUCGGCCAUACACAUAU-U-----
-------(((--(((................((....)).((((.((((((...(((.(((((((((.....))))))))).)))...)))))).....)))).))))))...-.----- ( -26.60)
>DroPer_CAF1 17650 114 - 1
GCGUGUGUGUGUCUGCUCCAGUUUACGUUUU------GCCGGCCUUUGAUUUGUAAACCAAAUAGUUUUCCGCGCUGUUUGUUUAUUUAAUUAGCAUUUGGCUGUAGUCCGACCGUAAGA
(((.(((((...(((...)))..)))(..((------((.((((.((((((.((((((.(((((((.......)))))))))))))..)))))).....))))))))..).))))).... ( -23.50)
>consensus
_______UGUGUGUGCUCCAAUUUUCGUUUU______GCCGGCCUUUGAUUUGUUAACCAAAUAGUUUUCCAAGCUGUUUGUUUAUUUAAUUAGCAUUCGGCUAUACACAUAC_U_____
.....................................(((((...((((((...(((.((((((((((...)))))))))).)))...))))))...))))).................. (-15.15 = -15.57 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:00 2006