Locus 6007

Sequence ID X_DroMel_CAF1
Location 15,425,360 – 15,425,468
Length 108
Max. P 0.953314
window9769

overview

Window 9

Location 15,425,360 – 15,425,468
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.89
Mean single sequence MFE -38.85
Consensus MFE -22.94
Energy contribution -23.50
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -2.98
Structure conservation index 0.59
SVM decision value 1.43
SVM RNA-class probability 0.953314
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15425360 108 - 22224390
CAAUGAAGCGGGG-GCACCGGACACCGG---UGCAUCCGAGGCUAAUGGAAAACAAUUCCAGGGAAAUGCCG--------CACGAACUCAAAUGUUUGCGGAGCCACUUCAACGUCAAAU
...((((((((..-(((((((...))))---)))..))).((((..(((((.....)))))........(((--------((..(((......)))))))))))).)))))......... ( -42.10)
>DroSec_CAF1 15485 120 - 1
CAAUGAAGUGGGGCACACCGGACACCGGUGGUGCAUCCGAGGCUAAUGGAAAACAAUUCCAGGGAAAUGCCUGGAACAUUUGCGAACUCAAAUGUUUGCGGAGCCACUCCGACGUCAAAU
...(((.((.(((((((((((...))))).))))......(((.............(((((((......)))))))..(((((((((......))))))))))))...)).)).)))... ( -45.90)
>DroEre_CAF1 14264 108 - 1
AAGUGCAGCAGGG-GCACCGGACACCGG---UGCAUCCGCGGCUAAUGGAAUACAAUUCCAGGAAAACACAG--------CGCGAACUCAAAUGUUUGCGGAGCCACUCGAACAUCAAAU
..((.(.((.(((-(((((((...))))---))).)))))((((..((((((...))))))...........--------(((((((......))))))).))))....).))....... ( -39.10)
>DroYak_CAF1 13988 106 - 1
--GUGAGGAAGGG-GCACCGGACACCAG---UGCAUCCGAGGCUAAUGGAAAACAAUUCGAGGAAAAGGCCG--------CACGAACUCAAAUGUUUGCGGAGCCACUCGAACAUCAAAU
--.((((...(((-((((.((...)).)---))).)))..((((....(((.....)))..........(((--------((..(((......)))))))))))).)))).......... ( -28.30)
>consensus
CAAUGAAGCAGGG_GCACCGGACACCGG___UGCAUCCGAGGCUAAUGGAAAACAAUUCCAGGAAAAUGCCG________CACGAACUCAAAUGUUUGCGGAGCCACUCCAACAUCAAAU
..(((.....(((.(((((((...))))...))).)))..((((..(((((.....)))))...................(((((((......))))))).)))).......)))..... (-22.94 = -23.50 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:59 2006