Locus 6005

Sequence ID X_DroMel_CAF1
Location 15,422,592 – 15,422,712
Length 120
Max. P 0.922265
window9766

overview

Window 6

Location 15,422,592 – 15,422,712
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -35.54
Consensus MFE -23.38
Energy contribution -22.35
Covariance contribution -1.02
Combinations/Pair 1.32
Mean z-score -1.94
Structure conservation index 0.66
SVM decision value 1.15
SVM RNA-class probability 0.922265
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15422592 120 - 22224390
CAUCUCAUCGAGGGCGUAGCCCACCCGGGUUUCGUGGUGUCCAUGAUCAAUCCGUCCGCCCUCAAUGAACACGAAGUAACCAUUCCCAUCCUCCUGAGACUUUCUCUCCAGUUUUUCAAU
....((((.(((((((.(((((....)))))((((((...))))))..........))))))).)))).........................((((((.....))).)))......... ( -31.50)
>DroPse_CAF1 14519 108 - 1
CAUCUCGUCCAGGGCAUACCCGACGCGCGUCUCAUGGUGGCCGUGGUCGAUGCGGCCGCCCUCGAUGAACACAAAAUAGCCGUCGGGAUGCUCC------------GACAGGCGCUCAAU
..(((.(((..((((((.(((((((.((.((((..((((((((((.....))))))))))...)).))..........))))))))))))))).------------))))))........ ( -46.10)
>DroSec_CAF1 12871 120 - 1
CAUCUCAUCGAGGGCGUAGCCCACACGGGUUUCAUGGUGUCCAUGAUCAAUCCGUCCGCCCUCAAUGAACACGAAGUAUCCAUUCCCAUCCUCCUGCGACUUUCUCUCCAGUUUUUCAAU
....((((.(((((((.(((((....)))))((((((...))))))..........))))))).)))).........................(((.((.......)))))......... ( -30.40)
>DroEre_CAF1 11713 120 - 1
CAUCUCAUCGAGGGCGUAACCCACCCGGGUUUCAUGGUGUCCAUGAUCGAUCCGCCCACCCUCAAUGAACACGAAGUAACCAUUCCCAUCCUCGCGGGACUUUUGCUCCAGUUUUUCAAU
....((((.(((((.(.(((((....)))))((((((...))))))..........).))))).))))....(.(((((....((((........))))...))))).)........... ( -31.90)
>DroYak_CAF1 11363 120 - 1
CAUCUCAUCGAGGGCAUAGCCCACCCGGGUUUCAUGGUGUCCAUGAUCGAUCCGCCCACCCUCAAUGAACACGAAGUAACCAUUCCCAUUCUCGCGAGACUUUUGCUCCAGUUUUUCAAU
....((((.(((((...(((((....)))))((((((...))))))............))))).))))....((((.(((...........((....))...........)))))))... ( -27.25)
>DroPer_CAF1 14468 108 - 1
CAUCUCGUCCAGGGCAUACCCGACGCGCGUCUCAUGGUGGCCGUGGUCGAUGCGGCCGCCCUCGAUGAACACAAAAUAGCCGUCGGGAUGCUCC------------GACAGGCGCUCAAU
..(((.(((..((((((.(((((((.((.((((..((((((((((.....))))))))))...)).))..........))))))))))))))).------------))))))........ ( -46.10)
>consensus
CAUCUCAUCGAGGGCAUAGCCCACCCGGGUUUCAUGGUGUCCAUGAUCGAUCCGCCCGCCCUCAAUGAACACGAAGUAACCAUUCCCAUCCUCC_G_GACUUU__CUCCAGUUUUUCAAU
....((((.((((((..........((((((((((((...))))))..))))))...)))))).)))).................................................... (-23.38 = -22.35 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:56 2006