Locus 6003

Sequence ID X_DroMel_CAF1
Location 15,418,862 – 15,418,978
Length 116
Max. P 0.719189
window9764

overview

Window 4

Location 15,418,862 – 15,418,978
Length 116
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 62.26
Mean single sequence MFE -30.57
Consensus MFE -8.07
Energy contribution -8.65
Covariance contribution 0.58
Combinations/Pair 1.58
Mean z-score -2.21
Structure conservation index 0.26
SVM decision value 0.40
SVM RNA-class probability 0.719189
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15418862 116 + 22224390
CGGUGAGACAGGUCCUGAAUACGGCUCUGGCCGUCCUGGGCAUAGAACCGGUGGACUACGUAUAAAGAUAUGUUGAGCAUAUCUUCUAUAA--ACAAAAAACAAAAAAAAAAAACACA
..(((.....(((((......(((.(((((((......))).)))).)))..)))))...((((((((((((.....)))))))).)))).--.....................))). ( -31.20)
>DroVir_CAF1 6344 91 + 1
CGGUGCGUGAGGUGCUGAAUGCAGCGUUGGCCCUGUUAGGAAUACAGCCCGUAGACUAUAUGUAAGGGCCUACG-AACGGG-CUU-----A--ACACCAA------------------
.((((..((((.(((((....))))((.((((((..(((...(((.....)))..)))......)))))).)).-....).-)))-----)--.))))..------------------ ( -30.20)
>DroSec_CAF1 9169 102 + 1
CGGUGAGACAGGUCCUGAAUACGGCUCUGGCCGUCCUGGGCAUAGAACCGGUGGACUACGUAUAAAGAUAUGUUGACCAUAUCUUCUAUAC--GCAAA--------------AACACA
..(((.....(((((......(((.(((((((......))).)))).)))..))))).((((((((((((((.....)))))))).)))))--)....--------------..))). ( -35.00)
>DroEre_CAF1 7068 96 + 1
CGGUAAGACAAGUUCUGAAUAAGGCUUUGGCAGUCCUGGGCAUAGAACCGGUGGAUUACGUAUAAAGGUAUGCUGAGCAAA-CUUUAAUACGACCUA---------------------
.(((...((..((((((......(((..((....))..))).))))))..))......(((((.(((((.(((...))).)-)))).))))))))..--------------------- ( -24.20)
>DroYak_CAF1 7487 97 + 1
CGGUAAAACAGGUCCUGAAUAAGGCUUUGGCCGUCCUGGGCAUAGAGCCGGUGGACUACGUAUAAAGAUAUGCUGAGCAUAUCUUCAAUACGACCCA---------------------
.(((......(((((.......((((((((((......))).)))))))...))))).(((((.(((((((((...)))))))))..))))))))..--------------------- ( -37.00)
>DroAna_CAF1 5976 89 + 1
CUGUGCGUCAGGUGAUGAACCAGGCUCUGUCCCUUCUGGGAAUCCUGCCCGUUGACUACGUUUAGGCAU-------------CCUUUAGGA--UCUAA--------------AAAACA
..(((.(((((((.....))).(((....((((....)))).....)))...)))))))((((.((.((-------------((....)))--)))..--------------.)))). ( -25.80)
>consensus
CGGUGAGACAGGUCCUGAAUAAGGCUCUGGCCGUCCUGGGCAUAGAACCGGUGGACUACGUAUAAAGAUAUGCUGAGCAUA_CUUCUAUAA__ACAAA____________________
..........(((((.......(((....)))...((((........)))).))))).......(((.((((.....)))).)))................................. ( -8.07 =  -8.65 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:54 2006