Locus 6002

Sequence ID X_DroMel_CAF1
Location 15,416,383 – 15,416,492
Length 109
Max. P 0.545160
window9763

overview

Window 3

Location 15,416,383 – 15,416,492
Length 109
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 75.10
Mean single sequence MFE -39.67
Consensus MFE -23.61
Energy contribution -25.57
Covariance contribution 1.95
Combinations/Pair 1.41
Mean z-score -1.35
Structure conservation index 0.60
SVM decision value 0.02
SVM RNA-class probability 0.545160
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15416383 109 + 22224390
----CGGCGGCGAAGACGGCGGAGGUCGAGGUAGAGCGGCUGGCGGAGC--GAAAUAGCUUCUGGACAGCGGUGCACUUUUCGUGAAAGCGAUAAGAGACGGACAGCUCCAGAUG
----.(.((.......)).)(((((((......(.((.((((.((((((--......)).))))..)))).)).).(((.((((....)))).))).....)))..))))..... ( -35.20)
>DroSec_CAF1 6709 113 + 1
GCUGCGGUGCCGGAGCCGGCGGAGGUCGAGGUAGCGCGGCUGGCGGAGC--GAAAUAGCUUCUGGACAGCGGUGCAUUUCUCGUGAAAGCGAUAAGAGACGGACAACUCCAGAUG
........((((....))))((((((((((((.((((.((((.((((((--......)).))))..)))).)))))))))((((....)))).........)))..))))..... ( -46.10)
>DroSim_CAF1 6887 113 + 1
GCUGCGGUGCCGGAGCCGGCGGAUGUCGAGGUAGCGCGGCUGGCGGAGC--UAAUUAGCUUCUGGACAGCGGUGCAUUUCUCGUGAAAACGAUAAGAGACGGACAACUCCAGAUG
.(((.(((((((....))))(..(((((((((.((((.((((.((((((--(....))).))))..)))).)))))))))((((....)))).....))))..).))).)))... ( -48.40)
>DroEre_CAF1 4645 103 + 1
----------CGGCGUCGACGGAGGUCGAGGUAGCGCAGCUGGCGGAGU--GAAAUAGCUUCUGGACAGCGGCGCACUUCUCGUGAAAGCGAUAAGAGACAGACAACUCCAGAUG
----------...((((...((((((((((((.((((.((((.((((((--......)).))))..)))).)))))))))((((....)))).........)))..)))).)))) ( -40.20)
>DroYak_CAF1 5272 100 + 1
----------CGGCG---GUGGAGGUCGGGGUAGCGCAGCCAGCGGAGU--GAAAUAGCUUCUGGACGGCGGCGCACUUCUCGUGAAAGCGAUAAGAGACAGACAACUCCAGAUG
----------.....---.(((((((((((((.((((.(((..((((((--......)).))))...))).)))))))))((((....)))).........)))..))))).... ( -35.60)
>DroPer_CAF1 8006 102 + 1
--------GUCGGCAUCGACGGAGUGCGAGCU-----GUUUGUCGCAGUCAGGAAUAGCUUCUCGAUCACAACGCACUUCUCAUAGAAGCGGUAGGCGACAACCAGUUCACUGUG
--------((((....)))).......(((((-----(.(((((((.(((..(((....)))..)))..(.((.(.((((.....)))).))).)))))))).))))))...... ( -32.50)
>consensus
________G_CGGAGCCGGCGGAGGUCGAGGUAGCGCGGCUGGCGGAGC__GAAAUAGCUUCUGGACAGCGGCGCACUUCUCGUGAAAGCGAUAAGAGACAGACAACUCCAGAUG
....................((((((((((((.((((.((((..(((((........)))))....)))).)))))))))((((....)))).........)))..))))..... (-23.61 = -25.57 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:53 2006