Locus 6001

Sequence ID X_DroMel_CAF1
Location 15,408,247 – 15,408,349
Length 102
Max. P 0.705899
window9762

overview

Window 2

Location 15,408,247 – 15,408,349
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 77.78
Mean single sequence MFE -35.86
Consensus MFE -21.12
Energy contribution -20.75
Covariance contribution -0.38
Combinations/Pair 1.29
Mean z-score -1.91
Structure conservation index 0.59
SVM decision value 0.36
SVM RNA-class probability 0.705899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15408247 102 - 22224390
GGCCAAGGAGCGGGCGGAACUGCGUGGGCAGCGGGAGAGGCAGAAGGAGCUGCGCGGCGAAGCCGACUGGAUGCUGCCCGCGUUGGCCAAGAAACUGGAGAA
((((((...((((......))))((((((((((..((..((((......)))).((((...)))).))...)))))))))).)))))).............. ( -47.70)
>DroVir_CAF1 6483 102 - 1
GGCAAAAUCGAGGGCGGAGGAGCGCAACAAACGCGAAAUUCAAAAGGAGCUGCGCGGCGAAAGCAAUUGGAUGCUGCCAGCGCUAGCUAACAAAUUGGACAA
((((..(((..(.((......)).)..(((.((((...(((....)))....))))((....))..))))))..))))(((....))).............. ( -28.90)
>DroGri_CAF1 6507 102 - 1
GGCAAAGGAGCGAGCUGAGGAGCGCAACAAGCGGGAGUUGCAAAAGGAGCUGCGCGGCGAGAAGGAUUGGAUGCUGCCAGCAGUAGCCAACAAAUUGGACAA
(((..........(((....)))(((((........))))).......((((.((((((............))))))))))....))).............. ( -28.10)
>DroEre_CAF1 2588 102 - 1
AGCCAAGGAGCGGGCGGAGCUGCGUGGCCAGCGGGACAGGCAGAAGGAACUGCGCGGCGAAGCCGACUGGAUGCUGCCAGCGGUGGCUAAGAAACUGGAGAA
..(((.......(((...(((((.((((.((((...(((((((......)))).((((...)))).)))..))))))))))))).))).......))).... ( -38.74)
>consensus
GGCAAAGGAGCGGGCGGAGCAGCGCAACAAGCGGGAGAGGCAAAAGGAGCUGCGCGGCGAAACCGACUGGAUGCUGCCAGCGGUAGCCAACAAACUGGACAA
(((((....((..(((....)))((.....)).......)).......((((.((((((.((....))...))))))))))..))))).............. (-21.12 = -20.75 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:52 2006