| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,408,035 – 15,408,134 |
| Length | 99 |
| Max. P | 0.659866 |
| Location | 15,408,035 – 15,408,134 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.87 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -24.58 |
| Energy contribution | -24.07 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15408035 99 - 22224390 CUUCAUCUUCCUCCUCGUUCAGUGAGGAUGAAAAGGAGCGCAAGCGACGCAAGAAGAAGUCCAAGAGGAGCCGUAAGGAAAGCGCCAGCGAGGACGAGU .(((.(((((((((((.((((.......))))..(((((....))..(....)......)))..))))))((....))...((....))))))).))). ( -31.80) >DroEre_CAF1 2376 99 - 1 CUUCAUCUUCCUCCUCGUCCAGUGAGGAUGAAAAGGAGCGCAAGCGACGCAAGAAGAAGUCCAAGAAGAGCCGCAAGGGAAGUGCCAGCGAGGACGAGU ((((....((((..((((((.....))))))..))))((....)).......))))..((((........((....))...((....))..)))).... ( -32.70) >DroYak_CAF1 1780 99 - 1 CUUCAUCUUCCUCCUCGUCCAGUGAGGAUGAAAAGGAGCGCAAGCGACGCAAGAAGAAGUCCAAGAAGAGCCGCAAGGAAAGCGCCAGUGAGGACGAGU ((((....((((..((((((.....))))))..))))((....)).......))))..((((........((....))...((....))..)))).... ( -32.50) >DroAna_CAF1 2213 99 - 1 GCUCCAGCUCUUCCUUAUCCAGUGAGGAUGAAAAGGAACGCCGGCGACGUAAGAAAAAGUCAAAGAAGAAGCGCCAGGAAAGCAACAGCGAGGACGAGU ((((...(((((((((((((.....))))))...((....))((((.(....)......((......))..)))).)))).((....)))))...)))) ( -23.80) >consensus CUUCAUCUUCCUCCUCGUCCAGUGAGGAUGAAAAGGAGCGCAAGCGACGCAAGAAGAAGUCCAAGAAGAGCCGCAAGGAAAGCGCCAGCGAGGACGAGU ((((....((((..((((((.....))))))..))))((((....).)))..))))..((((........((....))...((....))..)))).... (-24.58 = -24.07 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:52 2006