Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,671,686 – 1,671,800 |
Length | 114 |
Max. P | 0.686960 |
Location | 1,671,686 – 1,671,800 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.65 |
Mean single sequence MFE | -25.46 |
Consensus MFE | -17.44 |
Energy contribution | -17.24 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.81 |
Structure conservation index | 0.68 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1671686 114 - 22224390 CCCCAUCC------CUAUACCCAUAUCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUAACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGGCCCACUUGGAUGGCAUCGCA ..((((((------......((..(((.......(((....)))..((((.(((((((......)))...)))).))))..............)))..)).......))))))....... ( -26.12) >DroSec_CAF1 5801 120 - 1 CCCCAUCCCCAUUCCUAUCCCCAUCGCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUCACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGCCCCACUUGGAUGGCAUCGCA .........................(((((((..(((....))).........(((.(((((.(((((....)))))))))).))).....................)))))))...... ( -29.90) >DroSim_CAF1 6582 120 - 1 CCCCAUCCCCAUUCCUAUCCCCAUCGCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUAACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGCCCCACUUGGAUGGCAUCGCA .........................(((((((..(((....)))..((((.(((((((......)))...)))).))))............................)))))))...... ( -25.60) >DroEre_CAF1 9417 108 - 1 CCCCAUCC------CCAUCCCCAUCCCCAUUCCCAGGCA-----CAUCCCUUCGAACAUUUAACUGCCAUGCGGCGGGAAAUACACUGCCAAUGAUGCGCCCCACUUGGCUGUCAUCGA- ........------...............((((((((..-----....)))..............(((....))))))))............(((((((((......))).).))))).- ( -20.70) >DroYak_CAF1 6857 102 - 1 ------GU------CCAUCCCCAUAUCCAUUCGCAGGCA-----CAUCCCUUCGAACAUUUAACUGGCAUUCGGCGGGAAAUACUCUUCCAACGAUGCGCCGCACUUGGAUGUCAUCGA- ------..------........(((((((...((.(((.-----((((....((((..((.....))..))))(..((((......))))..))))).)))))...)))))))......- ( -25.00) >consensus CCCCAUCC______CUAUCCCCAUCGCCAUUCCCGGCCACAGCCCAUCCCUUCGAGCAUUUAACUGCCAUUCGGCGGGAAAUACUCUUCCAACGAUUCGCCCCACUUGGAUGGCAUCGCA ...................................((((.......((((.(((((((......)))...)))).))))........(((((.............)))))))))...... (-17.44 = -17.24 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:08 2006