Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 271,047 – 271,141 |
Length | 94 |
Max. P | 0.623242 |
Location | 271,047 – 271,141 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -14.43 |
Energy contribution | -14.15 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.36 |
Mean z-score | -1.61 |
Structure conservation index | 0.61 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 271047 94 - 22224390 CAAUAGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUGCGUU-UGGAGUUUU--CACCAUACU---- .....((((.(((((((((...(((((.((......)).)))))((((((.(((((....----------.)))))))-))))))).-.)))))).)--)))......---- ( -22.40) >DroGri_CAF1 39678 103 - 1 CAAUGGUGACAAUUUCACAUCUUAAUGCACAUGAAUGCGCGUUAAAAAUUUGCCGCCUUCUUUGACCCAAGGCGGCUACUUUUCGUU-UUC--CUUU--CAUUUUCCG---- ....((.(((...........(((((((.((....)).)))))))......((((((((.........))))))))........)))-..)--)...--.........---- ( -24.00) >DroSim_CAF1 40105 95 - 1 CAAUAGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUGCGUU-UGGAGUUUU--CACAAUACUA--- .....((((.(((((((((...(((((.((......)).)))))((((((.(((((....----------.)))))))-))))))).-.)))))).)--))).......--- ( -23.30) >DroEre_CAF1 18798 94 - 1 CAAUGGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUGCGUU-UGGAGUUUU--CACAAUACU---- .....((((.(((((((((...(((((.((......)).)))))((((((.(((((....----------.)))))))-))))))).-.)))))).)--)))......---- ( -23.10) >DroYak_CAF1 40477 93 - 1 CAAUGGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG----------GGCAGCGG-UUUG-GUU-UGGAGUUUG--CACAAUACU---- ...((....)).......((((....)))).....((((((...((((((((((((....----------.)))))).-...)-)))-)).....))--)))).....---- ( -24.60) >DroAna_CAF1 27173 100 - 1 CAAUGGUGACAAUUUCACGUCUUAAUGCACCUCAAUGUGCAUUAAAAAU-UGCCGCCUUU----------CUUGGCGG-UCUGCCUUAUGGAUCUCUAGUACAAUACUUUUG ....((((((........)))(((((((((......)))))))))....-.((((((...----------...)))))-)..)))...(((....))).............. ( -25.40) >consensus CAAUGGUGACAAUUUUACGUCUUAAUGGACCUCAAUGUGCAUUACAAAUUUGCUGUCUUG__________GGCAGCGG_UUUGCGUU_UGGAGUUUU__CACAAUACU____ .....(((..............(((((.((......)).)))))((((.((((((((.............)))))))).))))................))).......... (-14.43 = -14.15 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:39 2006