Locus 5999

Sequence ID X_DroMel_CAF1
Location 15,407,752 – 15,407,844
Length 92
Max. P 0.649886
window9760

overview

Window 0

Location 15,407,752 – 15,407,844
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 68.26
Mean single sequence MFE -34.15
Consensus MFE -15.54
Energy contribution -15.02
Covariance contribution -0.53
Combinations/Pair 1.46
Mean z-score -1.60
Structure conservation index 0.46
SVM decision value 0.24
SVM RNA-class probability 0.649886
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15407752 92 - 22224390
AAUCCCUACUGGAAGAGCAAUGGCACGGGUCUGCCCGGUUUCCAGAAGCCACAGGACGACGAU---------GAACGG------CAG----------GCCAAGCC---GCAUUCCAGCAG
.....((.((((((..((...(((...((((((((.(((((....)))))...(.....)...---------....))------)))----------)))..)))---)).)))))).)) ( -34.30)
>DroVir_CAF1 5939 111 - 1
AAUCCCUAUUGGAAAAGCAAUGGCACCGGCCUGCCGGGCUUUCAAAAGCCCAAAGCCGACGAA---------GAUGAAGAGGAUGCGCACCCAGCCAGCCACGCCAGGGCAAUACAACAG
..(((.....)))...((..((((..((((.....((((((....))))))...)))).....---------........((.((.((.....)))).))..))))..)).......... ( -33.10)
>DroGri_CAF1 5987 99 - 1
AAUCCCUACUGGAAAAGCAACGGCACUGGCCUGCCCGGCUUUCAGCGACCCAAAGCUGACGAU---------GAGCCG------GAGUACCCAGAUAGGC----GGCUGCAA--CAACAG
..((((((((((.........(((....)))(((((((((((((((........)))))....---------))))))------).))).)))).)))).----))(((...--...))) ( -35.70)
>DroEre_CAF1 2093 92 - 1
AAUCCCUACUGGAAGAGCAAUGGCACGGGUCUGCCCGGCUUCCAGAAGCCGCAGGACGACGAU---------GAGCGG------CAG----------GCCAAGCC---GCAUUCCAUCAG
.........(((((..((...(((...((((((((.(((((....)))))((...........---------..))))------)))----------)))..)))---)).))))).... ( -34.92)
>DroYak_CAF1 1497 92 - 1
AAUCCAUACUGGAAGAGCAAUGGCACGGGUCUGCCCGGCUUCCAGAAGCCACAGGAUGACGAU---------GAGCGG------CAG----------GACAAGCC---GCUUACCACCAG
.((((...(((((((.((....)).((((....)))).)))))))..(...).))))...(.(---------((((((------(..----------.....)))---))))).)..... ( -33.90)
>DroAna_CAF1 1945 98 - 1
AAUCCUUAUUGGAAGAGUAAUGGCACGGGCCUGCCCGGCUUCCAGAAGCCACAGGACGAUGACGACUCCGGGGAGCGG------GGU----------GCAAAGCA---GCACUCG---AA
..(((.....)))...((..((....(((....)))(((((....))))).))..)).....((.(((....)))))(------(((----------((......---)))))).---.. ( -33.00)
>consensus
AAUCCCUACUGGAAGAGCAAUGGCACGGGCCUGCCCGGCUUCCAGAAGCCACAGGACGACGAU_________GAGCGG______CAG__________GCCAAGCC___GCAUUCCAACAG
........(((((((.((....)).((((....)))).)))))))........................................................................... (-15.54 = -15.02 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:51 2006