Locus 5997

Sequence ID X_DroMel_CAF1
Location 15,402,143 – 15,402,249
Length 106
Max. P 0.586672
window9757

overview

Window 7

Location 15,402,143 – 15,402,249
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -31.04
Consensus MFE -16.34
Energy contribution -17.02
Covariance contribution 0.68
Combinations/Pair 1.22
Mean z-score -2.54
Structure conservation index 0.53
SVM decision value 0.11
SVM RNA-class probability 0.586672
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15402143 106 + 22224390
AUGGAUGGGGAUGGAGAUGAAUAUGGCAUAGCCAAUGGCCACGAAAUUAGCCAUUCACCAUUGAAUGGUAUGGAA--------------AAUAGUGGUAUGUUUAGAAAGAACCAUCACA
...(((((.........((((((((((...)))....(((((.......((((((((....))))))))......--------------....)))))))))))).......)))))... ( -28.82)
>DroEre_CAF1 39315 120 + 1
AUGGAUGGGGAUGGCUAUGAAUAUGGCAUGGCUAUUGGCCACCAAAUUAGCCAUUCACUAUUGACUGAUGUUGAACAGUAAAUAAGGCUAAUAGAGGUAUUUUUAGAAGGAACCCCCACA
.....((((((((((((((.......))))))))).....(((..((((((((((.(((.(..((....))..)..))).)))..)))))))...)))...............))))).. ( -32.60)
>DroYak_CAF1 42491 120 + 1
AUGAAUGGGGAUGGCUAUGAAUAUGACAUGGCCAUUGGCCACAAAAUUACCCAUUCACUAUUGAGUGAUGUUGAAAAGUAAAUACGGCUAAUAGAGGUAUUUUUAGAAAGAACUUACACA
.((((((((((((((((((.......))))))))))(....).......))))))))(((((.(((..((((........))))..))))))))..(((..(((.....)))..)))... ( -31.70)
>consensus
AUGGAUGGGGAUGGCUAUGAAUAUGGCAUGGCCAUUGGCCACAAAAUUAGCCAUUCACUAUUGAAUGAUGUUGAA_AGUAAAUA_GGCUAAUAGAGGUAUUUUUAGAAAGAACCAACACA
.(((((((.((((((((((.......))))))))))(....)........)))))))....................................(((((.............))))).... (-16.34 = -17.02 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:48 2006