Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,400,185 – 15,400,297 |
Length | 112 |
Max. P | 0.568762 |
Location | 15,400,185 – 15,400,297 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 63.80 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -11.43 |
Energy contribution | -12.68 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.28 |
Mean z-score | -1.31 |
Structure conservation index | 0.51 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15400185 112 + 22224390 AAUGCCAAUGCAAUCAUUAUUGUAGCAUACUUUUCAGCUGCGACUUGAGCAGGAAAUGUA---UAGUUAUCCUGUUCCUAAAAUAUAUUAUUCCAAAUUGACUUUUUUAUAUUGG ....((((((.........(((((((..........)))))))...(((((((((((...---..))).))))))))................................)))))) ( -22.10) >DroSec_CAF1 46092 94 + 1 AAUGCCAACGCAAUUAUUAUCGUAGCAUACUUUUCAGCUGCGACUUGCGCAGGAAAUGUG---UAGUUAUCCUGUUCCUAAAAAAUAUUUUUUCCAA------------------ .........((((......(((((((..........))))))).))))(((((((((...---..))).))))))......................------------------ ( -18.00) >DroEre_CAF1 37413 110 + 1 AAGGCCAACACACUCAUUAUCGUAGCAUACUUUUCAGCUGCGCCUUCUACUACUAGUAG----UAGCAGUUCUUCGGAU-GAAAAUAACACUUCUAACAUACACGUGUGUAUUGG ....(((((((((.......((((((..........)))))).((.((((((....)))----))).)).((....)).-........................))))))..))) ( -24.70) >DroYak_CAF1 40619 108 + 1 AAUGCCAACACAAUCAUUAUCGUAGCAUACUUUUCAGCUGCCACUGCUACAGGAAGUAGCUAAUGGCUAUCCUCUGGAG-GCAAGAAACACCUUCAA--UGCAC----GUAUUGU .........(((((......(((.((((...........((((..(((((.....)))))...)))).......(((((-(.........)))))))--)))))----).))))) ( -24.80) >consensus AAUGCCAACACAAUCAUUAUCGUAGCAUACUUUUCAGCUGCGACUUCUACAGGAAAUAG____UAGCUAUCCUGUGCAU_AAAAAUAACACUUCCAA__UACAC____GUAUUGG ...................(((((((..........)))))))...(((((((((((........))).))))))))...................................... (-11.43 = -12.68 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:45 2006