| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,397,769 – 15,397,861 |
| Length | 92 |
| Max. P | 0.999322 |
| Location | 15,397,769 – 15,397,861 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.50 |
| Mean single sequence MFE | -36.37 |
| Consensus MFE | -17.20 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.51 |
| Structure conservation index | 0.47 |
| SVM decision value | 3.51 |
| SVM RNA-class probability | 0.999322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15397769 92 - 22224390 UAGUAUUUUGCGACGCAGAAUGGCUCUCC---AGGC-------------------GUAUAUAUGUAUAU--AAGUGUAU----AUGUACCUACGUGUCCAGUUGCUGUGUCCACUGUGCA ..((((..((.(((((((..(((......---(.((-------------------(((((((((((((.--...)))))----)))))..))))).))))....)))))))))..)))). ( -29.40) >DroEre_CAF1 35060 109 - 1 CAGUAU-UUGCGACGCAGAAUGGCUUGACUCCAGGCGCCUGGAGGCUCUCCAGACAUAUGUAAGUGUA----GGAGUAU----AUGUACCUGUGUGUCCAGUUGCUGUGUCCAAU--GCA ..((((-(.(.(((((((...((((.(((.(((((.(((....))).((((..((((......)))).----))))...----.....)))).).))).)))).)))))))))))--)). ( -39.00) >DroYak_CAF1 26656 107 - 1 UAGUAUUUUGCGACGCAGAAUGGCUUUCCUCUAGGCAC-----------ACAUACAUAUGUAUGUAUACACAUGUGUAUAUGUAUGUACUUGUGUGUCUAGUUGCUGUGUCCAAU--GUA ...(((.(((.(((((((...((....)).((((((((-----------(((....((((((((((((((....))))))))))))))..)))))))))))...)))))))))).--))) ( -40.70) >consensus UAGUAUUUUGCGACGCAGAAUGGCUUUCCUC_AGGC_C____________CA_ACAUAUGUAUGUAUA___AAGUGUAU____AUGUACCUGUGUGUCCAGUUGCUGUGUCCAAU__GCA ..((...(((.(((((((..((((((......)))).................(((((.((((((((((......))))....)))))).)))))...))....))))))))))...)). (-17.20 = -18.10 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:38 2006