Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,671,052 – 1,671,151 |
Length | 99 |
Max. P | 0.860686 |
Location | 1,671,052 – 1,671,151 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -42.50 |
Consensus MFE | -37.53 |
Energy contribution | -38.20 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.88 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1671052 99 + 22224390 CUGGCACAUGUCCUGCCCACGUGCACGUGUCCUGCCCGGGACACAUGCCUGGGCAUGUGUGUGUGUGUGUGAGCAGCUCGAGAGCAGGACUUUGCAGAU ...(((...(((((((.((((..((((..(.(((((((((.(....))))))))).).)..))))..)))).)).(((....))))))))..))).... ( -47.50) >DroSec_CAF1 5118 96 + 1 CUGGCACAUGUCCUGCCCACGUGCACGUGUCCUACCC---ACUCAGGCCUGGGCAUAUGUGUGUGUGUGUGAGCAGCUCGAGAGCAGGACUUUGCAGAU ...(((...(((((((.((((..(((((((((((.((---.....))..)))).)))))))..))))..((((...))))...)))))))..))).... ( -38.00) >DroSim_CAF1 5968 96 + 1 CUGGCACAUGUCCUGCCCACGUGCACGUGUCCUACCC---ACUCAGGCCUGGGCAUGUGUGUGUGUGUGUGAGCAGCUCGAGAGCAGGACUUUGCAGAU ...(((...(((((((.((((..(((((((((...((---.....))...)))))))))..))))....((((...))))...)))))))..))).... ( -42.00) >consensus CUGGCACAUGUCCUGCCCACGUGCACGUGUCCUACCC___ACUCAGGCCUGGGCAUGUGUGUGUGUGUGUGAGCAGCUCGAGAGCAGGACUUUGCAGAU ...(((...(((((((.((((..(((((((((...((........))...)))))))))..))))....((((...))))...)))))))..))).... (-37.53 = -38.20 + 0.67)
Location | 1,671,052 – 1,671,151 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -36.13 |
Consensus MFE | -32.12 |
Energy contribution | -31.90 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.74 |
Structure conservation index | 0.89 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1671052 99 - 22224390 AUCUGCAAAGUCCUGCUCUCGAGCUGCUCACACACACACACACAUGCCCAGGCAUGUGUCCCGGGCAGGACACGUGCACGUGGGCAGGACAUGUGCCAG .........(((((((((..(((...)))..........((((((((....))))))))...)))))))))..(.(((((((.......)))))))).. ( -41.70) >DroSec_CAF1 5118 96 - 1 AUCUGCAAAGUCCUGCUCUCGAGCUGCUCACACACACACACAUAUGCCCAGGCCUGAGU---GGGUAGGACACGUGCACGUGGGCAGGACAUGUGCCAG ....(((..((((((((......((((((((.((...........((....)).)).))---))))))..((((....))))))))))))...)))... ( -33.20) >DroSim_CAF1 5968 96 - 1 AUCUGCAAAGUCCUGCUCUCGAGCUGCUCACACACACACACACAUGCCCAGGCCUGAGU---GGGUAGGACACGUGCACGUGGGCAGGACAUGUGCCAG ....(((..(((((((((.((.((.((.....(((...(((.((.((....)).)).))---).)).).....)))).)).)))))))))...)))... ( -33.50) >consensus AUCUGCAAAGUCCUGCUCUCGAGCUGCUCACACACACACACACAUGCCCAGGCCUGAGU___GGGUAGGACACGUGCACGUGGGCAGGACAUGUGCCAG ....(((..(((((((((.((.((.((.................(((((..((....))...)))))(....))))).)).)))))))))...)))... (-32.12 = -31.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:07 2006