| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,391,627 – 15,391,741 |
| Length | 114 |
| Max. P | 0.800683 |
| Location | 15,391,627 – 15,391,741 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 82.93 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -16.90 |
| Energy contribution | -17.21 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15391627 114 + 22224390 AAUCAAAGGGUAU----UAUUCAAGGGCUAAAACAUACAAAUGUAAUGUAAAUUAAACAUGCAACCCUAAUAUUUCAACGAA-ACGAAUGUUUAUGCAUUGAAAUACCUUUCGAGCAAG ..((.((((((((----(..((((..((..((((((.(...((((.(((.......))))))).........((((...)))-).).))))))..)).))))))))))))).))..... ( -20.60) >DroSec_CAF1 37849 118 + 1 AAUCGAAGGGUAUUUGUUAUUGAAGGGCUAAAACAUACAGAUAAAAUGUAAAAUAAACAUGCAACCGCAAUAUUUCAACGAA-ACGAACGUUUCUGCAUUGAAAUACCUUUCGGGCAGG ..(((((((((((((....((((((..........((((.......)))).........(((....)))...)))))).(((-((....))))).......)))))))))))))..... ( -27.10) >DroSim_CAF1 32192 118 + 1 AAUCGAAGGGUAUUUAUUAUUCAGGGGCUAAAACAUACAGAUGAAAUGUAAAAUAAACAUGCAACCGCAAUAUUUCAACGAA-ACGAACGUUUAUGCAUUGGAAUACCUUUCGGCCAGG ..(((((((((((((.....(((..(...........)...)))(((((...((((((.(((....)))....(((......-..))).))))))))))).)))))))))))))..... ( -24.40) >DroEre_CAF1 28664 112 + 1 AAUCGGAGGGUAUUU-------AAAGGCUGUAACAUACAAAUGAAAUGUAAAAUAAAAAUGCUAUCGCAAUUUUUCAACAAAAAGGAACGUUUAUGUAGGGAAAUACCUUUCGAGGAGG ..(((((((((((((-------....((...(((.((((.......))))....((((.(((....))).))))...............)))...))....)))))))))))))..... ( -23.50) >consensus AAUCGAAGGGUAUUU__UAUUCAAGGGCUAAAACAUACAAAUGAAAUGUAAAAUAAACAUGCAACCGCAAUAUUUCAACGAA_ACGAACGUUUAUGCAUUGAAAUACCUUUCGAGCAGG ..(((((((((((((...........((..((((.((((.......)))).........(((....)))....................))))..))....)))))))))))))..... (-16.90 = -17.21 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:31 2006