Locus 5986

Sequence ID X_DroMel_CAF1
Location 15,389,616 – 15,389,714
Length 98
Max. P 0.705362
window9735

overview

Window 5

Location 15,389,616 – 15,389,714
Length 98
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 67.50
Mean single sequence MFE -32.33
Consensus MFE -20.14
Energy contribution -21.70
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -1.21
Structure conservation index 0.62
SVM decision value 0.36
SVM RNA-class probability 0.705362
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15389616 98 - 22224390
AGUCUGCAAGGAGCGCCCCGAAGCUGUGGAGCAGAUGCGCAUCGAUGUCAAUAACUCACUUGAGGACACGAAC---AUGAAUGCGGUGGAAUCAGAAGCUC-------------------
.((((((..(.(((........))).)...)))))).(((((..(((((.....(((....))).....).))---))..)))))................------------------- ( -24.60)
>DroSec_CAF1 31645 120 - 1
AGUCUGGAAGGAGCGCUCCGCAGCGGUGGAGCAAAAGCGCAUCGAUGUCAAGAACUCAGCCGAGUUCAAGAACUUCAUGAAAGCGCUGGAAUCGGCAGCUCCCCAGGAGGGUGCGGAAAG
..(((((..((((((((((((....)))))))....((.(((.((..((..((((((....))))))..))...)))))...))((((....)))).))))))))))............. ( -46.00)
>DroSim_CAF1 29757 120 - 1
AGUCUGGAAGAAGCGCUCCGCAGCGGUGGAGAAAAAGCGCAUCGAUGUCAAGAACUCAGCCGAGUUCAAGAACUUCAUGAAAGCGCUGGAAUNNNNNNNNNNNNNNNNNNNNNNNNNNNN
..((..(........((((((....)))))).....((.(((.((..((..((((((....))))))..))...)))))...)).)..)).............................. ( -26.40)
>consensus
AGUCUGGAAGGAGCGCUCCGCAGCGGUGGAGCAAAAGCGCAUCGAUGUCAAGAACUCAGCCGAGUUCAAGAACUUCAUGAAAGCGCUGGAAUC_G_AGCUC___________________
..((..(.......(((((((....)))))))....((.(((.....((..((((((....))))))..)).....)))...)).)..)).............................. (-20.14 = -21.70 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:28 2006