Locus 5981

Sequence ID X_DroMel_CAF1
Location 15,383,328 – 15,383,440
Length 112
Max. P 0.925279
window9717

overview

Window 7

Location 15,383,328 – 15,383,440
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.30
Mean single sequence MFE -28.30
Consensus MFE -26.06
Energy contribution -26.50
Covariance contribution 0.44
Combinations/Pair 1.11
Mean z-score -1.84
Structure conservation index 0.92
SVM decision value 1.17
SVM RNA-class probability 0.925279
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15383328 112 - 22224390
GUCUUUUCAGACUUUGUCGCUGAAAAUCUCUCAAACAAAUUUCCGAAGCGUGAAGAGCGCGUAAACAGCGGCGGGGUCUCGAAAGUAGCGCUGAAAA--------CAAAAAUCAAAAUCC
(((((((.((((((((((((((........((............)).((((.....)))).....)))))))))))))).)))))..))........--------............... ( -29.60)
>DroSec_CAF1 25302 109 - 1
GUCUUUUCAGACUUUGUCGCUGAAAAUCUCUCGAACAAAUUUCCGAAGCGUGAAGAGCGCGUAAACAGUGACGGGGUCUCGAAAGUAGCGCUGAAA-----------AAAAUCAAAAUCC
(((((((.((((((((((((((........(((..........))).((((.....)))).....)))))))))))))).)))))..)).......-----------............. ( -30.90)
>DroEre_CAF1 22831 105 - 1
GU--UUUCAGACUUUGUCGCUGAAAAUCUCUCGAACAAAUUUCCGAAGCGUCAAGAGCGC-CAAACAGCGACGGCGUCUCGAAAGUAGCUCUGAAAAA------------AUCAAAAUCC
.(--(((((((..(((((((((........(((..........))).((((.....))))-....))))))))).((..(....)..)))))))))).------------.......... ( -28.40)
>DroYak_CAF1 14772 117 - 1
GU--UUUCAGACUUUGUCGCUGAAAAUCUCUCGAACAAAUUUCCGAAGCGUGAAGAGCGU-CAAACAGCGACGGCGUCUCAAAAGUAGCUCUGAAAAAAUCGUAAUAAAAAUCAAAAUCC
.(--(((((((...((((((((........(((..........))).((((.....))))-....))))))))((..((....))..))))))))))....................... ( -24.30)
>consensus
GU__UUUCAGACUUUGUCGCUGAAAAUCUCUCGAACAAAUUUCCGAAGCGUGAAGAGCGC_CAAACAGCGACGGCGUCUCGAAAGUAGCGCUGAAAA__________AAAAUCAAAAUCC
((..((((((((((((((((((........(((..........))).((((.....)))).....)))))))))))))).))))...))............................... (-26.06 = -26.50 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:13 2006