Locus 5975

Sequence ID X_DroMel_CAF1
Location 15,379,305 – 15,379,421
Length 116
Max. P 0.700975
window9703

overview

Window 3

Location 15,379,305 – 15,379,421
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.16
Mean single sequence MFE -18.12
Consensus MFE -14.80
Energy contribution -14.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.82
SVM decision value 0.35
SVM RNA-class probability 0.700975
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15379305 116 + 22224390
ACCCCCCCUCUCCACACAAAACACCAAUUGUAAGGUGUAAAAUAAACUGUGUAC----CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA
......((.....(((((..(((((........))))).........)))))..----..))......((((((((((((((............))))))))))((.......)))))). ( -19.00)
>DroSim_CAF1 14665 115 + 1
ACUCCCCC-CUCAACUUGCCACACCAAUUGUAAGGUGUAAAAUAAACUGUGUAC----CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA
........-((((....((.(((((........))))).......((((.....----.)))).....))((((((((((((............))))))))).))).......)))).. ( -19.10)
>DroEre_CAF1 19339 98 + 1
------------------CCCCCCCAAUUGUAAGGUGUAAAAUAAACUGUGUAC----CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGUAGAAAAACACUGCGCA
------------------..........(((..(((((.......((((.....----.)))).......((((((((((((............))))))))).)))...)))))..))) ( -15.90)
>DroYak_CAF1 11407 102 + 1
------------------CCUCCCCAAUUGUAAGGUGUAAAAUAAACUGUGUACCCACCCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA
------------------..........(((..(((((........((((..(((.....)))..)))).((((((((((((............))))))))).)))...)))))..))) ( -18.50)
>consensus
__________________CCACACCAAUUGUAAGGUGUAAAAUAAACUGUGUAC____CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA
............................(((..(((((.......((((..........)))).......((((((((((((............))))))))).)))...)))))..))) (-14.80 = -14.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:01 2006