Locus 5974

Sequence ID X_DroMel_CAF1
Location 15,378,629 – 15,378,734
Length 105
Max. P 0.521496
window9702

overview

Window 2

Location 15,378,629 – 15,378,734
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.96
Mean single sequence MFE -24.31
Consensus MFE -8.06
Energy contribution -9.78
Covariance contribution 1.72
Combinations/Pair 1.21
Mean z-score -1.79
Structure conservation index 0.33
SVM decision value -0.02
SVM RNA-class probability 0.521496
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15378629 105 + 22224390
AUAGUCAGCUCAUACAAAUGUGGCACACACUUGAACAAAUUCUUGAGCAGCAACUUUAGAAUUUUGUUAAGAAUUUAGCA-CAUAUCUUAAAGAUACAGAA--------------UUGAU
...(((((.((.......((((.......(((((..(((((((.(((......))).)))))))..))))).......))-))((((.....))))..)).--------------))))) ( -17.94)
>DroSec_CAF1 20672 117 + 1
UUAGUCAGCGCAUACAAAUGUGCCAGACACUUGGACAAGUUCUUGAG---CAACUCUAGAAUUUUGUUAGGAAUUUAGCAAAAUAUCUUAAAGAUACUGAAAUGCGCUCAUUGAUUUGAU
...(((.((((((....))))))..))).......((((((..((((---(..........(((((((((....)))))))))((((.....)))).........)))))..)))))).. ( -29.50)
>DroSim_CAF1 14007 116 + 1
UUAGUCAGCGCAUAGAAAUGUGCCAGACACUUGGACAAAUUCUUGAG---CAACUCUAGAAUUUUGUUAGGAAUUUACCA-AAUAUCUUAAAGAUACUGAAAUGCGCUAAUUGAUUUGAU
(((((.((((((((....)))))(((....((((..((((((((((.---(((..........))))))))))))).)))-).((((.....)))))))......))).)))))...... ( -25.90)
>DroEre_CAF1 18750 116 + 1
UCAGUCAACGCACACAAAUGUGGCAUACACUUGGCCAAAUUCUUGAA---CAACUUUUCAAUUUUAUUCGGAAUUUUCUA-ACCAUCUCAAGGAUACAGAAAUGAGCAUAUUCAUUUGAC
...(((((.((.(((....))))).........((...((((((((.---.........(((((......))))).....-......)))))))).((....)).))........))))) ( -17.60)
>DroYak_CAF1 10773 112 + 1
UCAGUCAACGCAUACAUAUGUGGCACACACUGUGACAAAUUCU-------CAACUUUACAAUUUCGUUGAGAGUUUACCA-ACUAUCUCAAAGAUACAGAAAUGUGUUUGUUGAUUUGAG
(((((((((.....((((.(((.....)))))))..(((((((-------((((...........)))))))))))....-..........(((((((....)))))))))))).)))). ( -30.60)
>consensus
UUAGUCAGCGCAUACAAAUGUGGCACACACUUGGACAAAUUCUUGAG___CAACUUUAGAAUUUUGUUAGGAAUUUACCA_AAUAUCUUAAAGAUACAGAAAUGCGCUUAUUGAUUUGAU
...((((((((((....))))).......(((((..(((((((.(((......))).)))))))..)))))............((((.....))))...................))))) ( -8.06 =  -9.78 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:00 2006