Locus 5972

Sequence ID X_DroMel_CAF1
Location 15,377,739 – 15,377,859
Length 120
Max. P 0.875854
window9699

overview

Window 9

Location 15,377,739 – 15,377,859
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -27.26
Consensus MFE -27.14
Energy contribution -26.58
Covariance contribution -0.56
Combinations/Pair 1.09
Mean z-score -1.22
Structure conservation index 1.00
SVM decision value 0.89
SVM RNA-class probability 0.875854
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15377739 120 + 22224390
CAGUAGAUAGAACUCGAUUCCAUACUGUUUGUACAAUAUUUAUGGACGGAUUAUGUCAUUUGACAAGCGCAAUUGUUUGCUCAUUUACAGCACCGAUAUCGGGCAUUUGAAUGAACCCCC
..((((((((..............(((((..((.......))..)))))....((((....)))).......))))))))(((((((..((.(((....)))))...)))))))...... ( -27.30)
>DroSec_CAF1 19780 120 + 1
CAGUAGAUAGAACUCGAUUCCAUACUGUUUAUACCAUAUUUAUGGACGGAUUAUGUCAUUUGACAAGCGCAAUUGUUUGCUCAUUUACAGCACCGAUAUCGGGCAUUUGAAUGAACCCCC
..((((((((..............(((((((((.......)))))))))....((((....)))).......))))))))(((((((..((.(((....)))))...)))))))...... ( -27.40)
>DroSim_CAF1 13143 120 + 1
CAGUAGAUAGAACUCGAUUCCAUACUGUUUAUACAAUAUUUAUGGACGGAUUAUGUCAUUUGACAAGCGCAAUUGUUUGCUCAUUUACAGCACCGAUAUCGGGCAUUUGAAUGAACCCCC
..((((((((..............(((((((((.......)))))))))....((((....)))).......))))))))(((((((..((.(((....)))))...)))))))...... ( -27.40)
>DroEre_CAF1 17887 118 + 1
CAGUAGAUAGAACUCAAUUCCA-AUUGUUCAUACAAUAUUUAUGGACGGAUUAUGUCAUUUGACAGGCGCAAUUGUUUGCUCAUUUACAGCUCCGAUAUCGGGCAUUUGAAUGAACC-AC
..((((((((............-.(((((((((.......)))))))))....((((....)))).......))))))))(((((((..((.(((....)))))...)))))))...-.. ( -26.90)
>DroYak_CAF1 9939 120 + 1
CAGUAGAUAGAACUCAAUUCCAUAUUGUUUAUACAAUAUUUAUGGACGGAUUAUGUCAUUUGACAAGCGCAAUUGUUUGCUCAUUUACAGCUCCGAUAUCGGGCAUUUGAAUGAACCCCC
..((((((((...((...((((((((((....))))....))))))..))...((((....)))).......))))))))(((((((..((.(((....)))))...)))))))...... ( -27.30)
>consensus
CAGUAGAUAGAACUCGAUUCCAUACUGUUUAUACAAUAUUUAUGGACGGAUUAUGUCAUUUGACAAGCGCAAUUGUUUGCUCAUUUACAGCACCGAUAUCGGGCAUUUGAAUGAACCCCC
..((((((((..............(((((((((.......)))))))))....((((....)))).......))))))))(((((((..((.(((....)))))...)))))))...... (-27.14 = -26.58 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:57 2006