Locus 5971

Sequence ID X_DroMel_CAF1
Location 15,376,631 – 15,376,746
Length 115
Max. P 0.756438
window9698

overview

Window 8

Location 15,376,631 – 15,376,746
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.17
Mean single sequence MFE -30.28
Consensus MFE -22.19
Energy contribution -22.38
Covariance contribution 0.19
Combinations/Pair 1.11
Mean z-score -1.99
Structure conservation index 0.73
SVM decision value 0.49
SVM RNA-class probability 0.756438
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15376631 115 - 22224390
UGAAAAAGGGCUUAAGUGCCGCCUGCUGUUUGAAGUAAAUGCAAAAGCAAGUGGGCUGGGCAUUAAAGUUAAUUACCCCAUAUAUUUGGCACUUAAAGCUCAGAAACUGUUGUAU-----
.......((((((((((((((((..((((((...((....))..)))).))..)))((((.((((....))))...)))).......))))))).))))))..............----- ( -36.50)
>DroSim_CAF1 12010 115 - 1
UGAAAAAGGGCUUAAGUGCCGACUGCUGUUUGAAGUCAAUGCAAAAGCAAGUGGGCUGGGCAUUAAAGUUAAUUACCUCAUAUAUUCGGCACUUAAAGCUCCGAAACUGUUGUAU-----
.......(((((((((((((((((.(.....).))))(((((...(((......)))..))))).......................))))))).)))).)).............----- ( -32.70)
>DroEre_CAF1 16811 116 - 1
UAAAAAAGGGC-UAAGUGC---CUGCUGUUUGAAAUAAAUGCAAAAGCAAGUGGGCUGAGCAUUAAAGUUAAUUACCUCUUAUAUUUGGCACUUAAAGCUCGGAAACUGCUGUAUACGAG
.......((((-(((((((---(.(((.((((.........)))))))(((.((....(((......))).....)).)))......)))))))..)))))(....)............. ( -27.10)
>DroYak_CAF1 8754 112 - 1
UAAAAAAGGGCUUAAGUGC---CUGCUGUUUGAAAUAAAUGCAAAAGCAAGUGGGCUGGGCAUUAAUGUUAAUUACCUCUUAUAUUCGGCACUUAAAGUUUAGAAACUGUCGUAU-----
........(((((((((((---(.(((.((((.........)))))))(((.((....((((....)))).....)).)))......)))))))))((((....)))))))....----- ( -24.80)
>consensus
UAAAAAAGGGCUUAAGUGC___CUGCUGUUUGAAAUAAAUGCAAAAGCAAGUGGGCUGGGCAUUAAAGUUAAUUACCUCAUAUAUUCGGCACUUAAAGCUCAGAAACUGUUGUAU_____
.......(((((((((((((...((((.((((.........)))))))).(.((....(((......))).....)).)........))))))).))))))................... (-22.19 = -22.38 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:56 2006